Gene detail

Gene detail information of Glyur000051s00003471

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32480.1	3.00E-38	Protein of unknown function (DUF506)
NR	XP_003610940.1	3.93E-121	hypothetical protein MTR_5g008720 [Medicago truncatula]
trEMBL	tr\|G7K973\|G7K973_MEDTR	1.00E-121	DUF506 family protein {ECO:0000313\|EMBL:AES93898.1}

Sequence

Transcript Sequence

>Glyur000051s00003471.1
CACTACGTTTGTATGTATCATATAGAGAAAATGGAGAAAAAAATAGAGGGAATCTTTTCCCGTAAAAATATCCTAAACTCACGTCCATTATTTATTTGACCCTCCACATATGCTATAGCTGACATGGCAAACCCTATATATATATACATNCATTAGACATGCTCATTTTTTTCTTTGTAAGAAGAAGAGAATTTTGTTTGNTCTCTTCTTCCACCACTTTGTCTTTTGTTGGAAGAGAAAAAGAAGGGCATGAATATGGGTAGCCTTGAAGAAAAAGTNTGTGTGTTCATGGATGATATTGAACATTATAATTATTCCAATGAATCAGAGCTGATGCATGGAGGCTCTATAATGNAGGAGGACCTCTGGTTATCAGAAACCAGCAGTGACTCTGATGAACCACCACAAAGGACTCTGTATTGGGAATCTCAGGAGGTACTGCTTCAGGAAATTTTGGAGCGATACCATTTAACGGGGTCGAAATTGAGACAAGAGGTTGGTCGAATCATAAAAATGGTCAAAGCTTCGGATTTTTGCAGCTGCTGCTTCAAGCCTAACTCTTTCGATTGCAACACCTGTTTGAGAAGANGAGTGGTTGCTGTCCTCCGCGACAGAGGATTCAATACCAACCTCTGCATATCAGAATGGAGAACCACAAAAAAGTTTCTAGGAGGCTCTCACGAGTATATTGAAGTGATTGTAAGCACATCAACAAGGAAGAAGCAGATCCCATTTCTGATTGAATTGGAATTCAGGGACCAGTTTCAGATTGCAAAAGCAGGTGAAGAATACCAGAAACTTGTGTCCTGTTTGCCTGAGTTTTATGTTGGGAAGCCAGAATGCTTAACTGCCATTGTTCGAGTTATGTGTGATGCTGCAAAGAAATCAATGAAGGAAAAGAAAATGCATCTGGGTCCGTGGAGGAAGAGCAGCTTCATGCAAATGAAGTGGTCAGGTTTCAATCAAACATTGAGGACTTCCAACGATAAATCATTGGGTAGACTTCCCCATACACAAGCAAGTGACTCTTACCAGAGTTTTTCAGGAGCTCCTAATGCTCTGGTAGTCACCTGAATTGTTTTCTTGAATGAGAGAAAGTTACCATTCCAAANGGTAGTTTTTGAAGGGGAATTTTGGACTCAAAACCTCTTTAGTAGTAGGAGATTATGCCCCAGTGGAGGAATATATTATAGGGCATATAGAGACCATTCGCAATTCATTGNCCTTTAGGTCCAGGATTATAATGTTAATATATTCGCCTAGTAATAGCAGCTACCGTGTACTGTTATGCAGTAACTCAGTTTTCAATTGTAAATGTTGTTGAATCATAAATGTATTCAACTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00051	469870	472529	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000051s00003471.1	PF04720.7	DUF506	52	237	3.90E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.003
SRR1783602	moderate drought stress	0.003
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.160
DRR006520	Root Summer glycyrrhizin high producing strain	0.156
DRR006521	Root Winter glycyrrhizin high producing strain	0.656
DRR006522	Root Winter glycyrrhizin high producing strain	0.645
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.208
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.533

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.424
SRR2868004	Drought Stress (root)	0.100
SRR2967015	Control (root)	0.067

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.172
SRR9715740	Leaf	59.150
SRR9715741	Leaf	30.562
SRR9715739	Root	0.000
SRR9715742	Root	0.007
SRR9715743	Root	0.182

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.165
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.090
SRR8749030	Uninduced	0.102
SRR8749031	Uninduced	0.191
SRR8749032	Uninduced	0.164

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.203
SRR8400027	Control - Root	0.209