Gene detail information of Glyur000051s00003469 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10180.1 | 0 | light-mediated development protein 1 / deetiolated1 (DET1) |
| NR | XP_006573844.1 | 0 | PREDICTED: light-mediated development protein DET1-like isoform X3 [Glycine max] |
| Swissprot | tr|Q9ZNU6|DET1_SOLLC | 0 | Light-mediated development protein DET1 |
| trEMBL | tr|K7K5E8|K7K5E8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G44200.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 464223 | 469647 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003469.1 | PF09737.4 | Det1 | 122 | 539 | 3.50E-139 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.908 |
| SRR1783600 | control | 9.007 |
| SRR1783602 | moderate drought stress | 11.787 |
| SRR1811619 | moderate drought stress | 11.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.472 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.233 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.968 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.326 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.433 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.631 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.744 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.030 |
| SRR2868004 | Drought Stress (root) | 24.137 |
| SRR2967015 | Control (root) | 25.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.254 |
| SRR9715740 | Leaf | 36.931 |
| SRR9715741 | Leaf | 32.310 |
| SRR9715739 | Root | 2.536 |
| SRR9715742 | Root | 7.113 |
| SRR9715743 | Root | 6.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.513 |
| SRR8749028 | MeJA induced 9h | 13.157 |
| SRR8749029 | MeJA induced 9h | 7.829 |
| SRR8749030 | Uninduced | 10.546 |
| SRR8749031 | Uninduced | 9.739 |
| SRR8749032 | Uninduced | 6.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.166 |
| SRR8400027 | Control - Root | 23.842 |