Gene detail information of Glyur000051s00003465 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25340.1 | 8.00E-87 | FK506 BINDING PROTEIN 53 |
| NR | XP_004511480.1 | 0 | PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP53-like [Cicer arietinum] |
| COG | YP_001839010.1 | 8.00E-27 | FK506-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] |
| Swissprot | tr|Q93ZG9|FKB53_ARATH | 9.00E-112 | Peptidyl-prolyl cis-trans isomerase FKBP53 |
| trEMBL | tr|G7K7Y8|G7K7Y8_MEDTR | 0 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 445577 | 450285 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003465.1 | PF00254.23 | FKBP_C | 429 | 518 | 6.10E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.461 |
| SRR1783600 | control | 12.456 |
| SRR1783602 | moderate drought stress | 14.496 |
| SRR1811619 | moderate drought stress | 14.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.367 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.623 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.898 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 32.785 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.607 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.645 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.296 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.233 |
| SRR2868004 | Drought Stress (root) | 25.074 |
| SRR2967015 | Control (root) | 22.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.459 |
| SRR9715740 | Leaf | 14.393 |
| SRR9715741 | Leaf | 10.528 |
| SRR9715739 | Root | 0.666 |
| SRR9715742 | Root | 9.812 |
| SRR9715743 | Root | 8.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 100.204 |
| SRR8749028 | MeJA induced 9h | 38.804 |
| SRR8749029 | MeJA induced 9h | 50.405 |
| SRR8749030 | Uninduced | 18.927 |
| SRR8749031 | Uninduced | 9.964 |
| SRR8749032 | Uninduced | 10.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.914 |
| SRR8400027 | Control - Root | 23.485 |