Gene detail information of Glyur000051s00003462 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71480.1 | 3.00E-60 | Nuclear transport factor 2 (NTF2) family protein |
| NR | KEH21834.1 | 2.13E-110 | nuclear transport factor 2 (NTF2) family protein [Medicago truncatula] |
| trEMBL | tr|A0A072TWG4|A0A072TWG4_MEDTR | 8.00E-111 | Nuclear transport factor 2 (NTF2) family protein {ECO:0000313|EMBL:KEH21834.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 438157 | 440758 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003462.1 | PF12680.2 | SnoaL_2 | 79 | 178 | 1.50E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.578 |
| SRR1783600 | control | 5.659 |
| SRR1783602 | moderate drought stress | 5.732 |
| SRR1811619 | moderate drought stress | 5.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.300 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.330 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.651 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.626 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.545 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.670 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.192 |
| SRR2868004 | Drought Stress (root) | 4.021 |
| SRR2967015 | Control (root) | 2.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.878 |
| SRR9715740 | Leaf | 91.383 |
| SRR9715741 | Leaf | 62.958 |
| SRR9715739 | Root | 8.776 |
| SRR9715742 | Root | 8.623 |
| SRR9715743 | Root | 9.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.337 |
| SRR8749028 | MeJA induced 9h | 3.372 |
| SRR8749029 | MeJA induced 9h | 1.115 |
| SRR8749030 | Uninduced | 0.698 |
| SRR8749031 | Uninduced | 0.224 |
| SRR8749032 | Uninduced | 0.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.308 |
| SRR8400027 | Control - Root | 16.585 |