Gene detail information of Glyur000051s00003459 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10040.1 | 4.00E-57 | cytochrome c-2 |
| NR | NP_001235212.1 | 2.66E-76 | uncharacterized protein LOC100305937 [Glycine max] |
| COG | YP_001831159.1 | 8.00E-30 | cytochrome c class I [Beijerinckia indica subsp. indica ATCC 9039] |
| Swissprot | tr|P00054|CYC_SESIN | 2.00E-73 | Cytochrome c |
| trEMBL | tr|C6SX87|C6SX87_SOYBN | 1.00E-76 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G44120.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 418440 | 421315 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003459.1 | PF00034.16 | Cytochrom_C | 13 | 109 | 1.90E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.345 |
| SRR1783600 | control | 36.254 |
| SRR1783602 | moderate drought stress | 11.475 |
| SRR1811619 | moderate drought stress | 11.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.135 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.541 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.432 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.486 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 104.288 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 104.805 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 71.068 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 71.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 73.917 |
| SRR2868004 | Drought Stress (root) | 60.812 |
| SRR2967015 | Control (root) | 32.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 142.940 |
| SRR9715740 | Leaf | 101.100 |
| SRR9715741 | Leaf | 167.213 |
| SRR9715739 | Root | 43.844 |
| SRR9715742 | Root | 120.995 |
| SRR9715743 | Root | 95.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 141.179 |
| SRR8749028 | MeJA induced 9h | 89.194 |
| SRR8749029 | MeJA induced 9h | 175.952 |
| SRR8749030 | Uninduced | 168.511 |
| SRR8749031 | Uninduced | 158.035 |
| SRR8749032 | Uninduced | 219.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.206 |
| SRR8400027 | Control - Root | 54.936 |