Gene detail information of Glyur000051s00003455 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18110.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004511471.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q5G1S8|PP241_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g18110, chloroplastic (Precursor) |
| trEMBL | tr|I1LG37|I1LG37_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G01570.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 392976 | 398166 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003455.1 | PF13041.1 | PPR_2 | 249 | 293 | 5.30E-11 |
| Glyur000051s00003455.1 | PF13041.1 | PPR_2 | 319 | 366 | 4.80E-17 |
| Glyur000051s00003455.1 | PF01535.15 | PPR | 392 | 422 | 7.40E-06 |
| Glyur000051s00003455.1 | PF13041.1 | PPR_2 | 424 | 471 | 4.60E-16 |
| Glyur000051s00003455.1 | PF01535.15 | PPR | 498 | 527 | 3.10E-05 |
| Glyur000051s00003455.1 | PF01535.15 | PPR | 533 | 562 | 0.004 |
| Glyur000051s00003455.1 | PF01535.15 | PPR | 705 | 734 | 0.83 |
| Glyur000051s00003455.1 | PF01535.15 | PPR | 741 | 769 | 0.1 |
| Glyur000051s00003455.1 | PF01535.15 | PPR | 811 | 839 | 4.80E-05 |
| Glyur000051s00003455.1 | PF01535.15 | PPR | 917 | 945 | 0.01 |
| Glyur000051s00003455.1 | PF13041.1 | PPR_2 | 983 | 1031 | 5.10E-11 |
| Glyur000051s00003455.1 | PF13812.1 | PPR_3 | 1056 | 1087 | 0.001 |
| Glyur000051s00003455.1 | PF01535.15 | PPR | 1094 | 1117 | 0.059 |
| Glyur000051s00003455.1 | PF01535.15 | PPR | 1127 | 1152 | 0.034 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.321 |
| SRR1783600 | control | 1.279 |
| SRR1783602 | moderate drought stress | 1.189 |
| SRR1811619 | moderate drought stress | 1.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.526 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.551 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.681 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.626 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.576 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.542 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.770 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.906 |
| SRR2868004 | Drought Stress (root) | 1.333 |
| SRR2967015 | Control (root) | 1.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.753 |
| SRR9715740 | Leaf | 6.939 |
| SRR9715741 | Leaf | 3.280 |
| SRR9715739 | Root | 0.106 |
| SRR9715742 | Root | 0.841 |
| SRR9715743 | Root | 0.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.114 |
| SRR8749028 | MeJA induced 9h | 3.185 |
| SRR8749029 | MeJA induced 9h | 2.175 |
| SRR8749030 | Uninduced | 0.787 |
| SRR8749031 | Uninduced | 0.557 |
| SRR8749032 | Uninduced | 1.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.563 |
| SRR8400027 | Control - Root | 1.422 |