Gene detail

Gene detail information of Glyur000051s00003449

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28220.1	2.00E-84	Eukaryotic aspartyl protease family protein
NR	XP_007157025.1	0	hypothetical protein PHAVU_002G037300g [Phaseolus vulgaris]
Swissprot	tr\|Q6XBF8\|CDR1_ARATH	3.00E-85	Aspartic proteinase CDR1 (Precursor)
trEMBL	tr\|V7CFT6\|V7CFT6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW29019.1}

Sequence

Transcript Sequence

>Glyur000051s00003449.1
ATGGCTACCATTGGCTTTCACTTGTGCCTCTTCGTTGTGTTTATGTTTTCATGCCAAACATTGATCGAAGCACAAAATGGTGGATTCAGTGTTCAACTACTTCGCCATCACTCCTCAGGTGAACTTCACAAACACATATTTCACTCATTTTATCAAGTTCCCAAGAAATCATCATCCCAAAATGGTGCTACCACTAGAGTGATACCCAACAATGGTGACTACCTCATGAAGCTTGAACTGGGAACACCACCAGTGGCCATATATGGTTTGATTGACACAGGTAGTGACCTAGTGTGGGCACAATGCAAACCATGCAGAGGTTGCTTTAAGCAAAAAAATCCAATGTTTGATCCCTTAAAGTCCAAAACATACACAAACATTCAGTGTAATTCACAACAGTGCACTTCATTCCTTGATCATCACTCTTGCACTAGTCAAAATCTATGTGCTTATTCTTATGGCTATGGGGATGGTTCGGTAACAAAAGGGGTACTTGCAAGGGAAACAGCCACCTTTAGTTCCATCAATGGAGAACAAGTTGTTAAAGACATTTTGTTTGGGTGTGGCCACAATGACACAGGGATTTTTAATGAGAATGACATGGGAATAATTGGATTGGGAAGAGGACCTTTGTCACTTGTCTCACAAATAGGTACCCATTATGGCTGCAGAAGCTTCTCTCAGTGCTTGGTTCCTTTTGATGCAAACCCCAACATTTCAGGCACAATTAGTTTTGGTGCAGACGGTAAAGTTTCAGGTGAAGGAGTAGTCACAACTCCTCTGGACCCTAGAAAAGATCAAACCTATTATGCAGTGACACTAAAAGGTATAAGTGTTGGAAACAAATTTGTACCTTTTGATTCTTCTAAAAATATTTCCAAGGGGAATATAATAATTGATTCGGGTACACCAGCAACACTTGTACCACAGGAACTTTATGATGGTTTGGTAGGGGAATTGAAGGCACAAATTAAGCAGAAACCCATTGAAGACCCAAGTTTGGGCACACACCTTTGTTATGGGAGCAACGTAATTCATGAAGGGCCAATTTTGACTGCTCATTTTGAAGGGGCAGATGTGTCATTAGTGCCATCACAAACCTTCATTTTTGCAAAAGAAGCGGCATTTTGTTTTGCAATGGCTGTGGCTACTGATGGACAACCTATATTTGGCAGTTATGCTCAATCAAACATTTTGATTGGATTTGATCTTGATAGAATGGTAGTCTCCTTTAAACCAACCGATTTTCCCAAGAAATCATTTGCCCCAAATGGTCCCTACACTAGAGTGACATCCAACAATGGTGACTATCTCATGAAGCTCACATTGGGAACACCACCAGTGGACATATATGGCTTAGTTGACACAGGTAAGCAGTGTTCACCCTTTGGTAACTCCTGCTCTCCTCAAAAACTGTGCGCTTATAGTTATGGTTATGCAGATTCTTCAGTAACAAAAGGGGTGCTTGCAAGGGAAACAGTCACCTTTAGTTCCACCGACGGTGAGCCTGTTGTTGCCGGGGACATTACCTTCGGGTGTGGGCACAGCAACTCGGGAACTTTCAACGAAAACGACATGGGAGTCATTGGAATGGGTGGTGGGCCTCTGTCACTTGTCTCACAAATTGGAACCCTTTATGGAAGCAGAAGGTTCTCCCAGTGCCTGGTTCCTTTCCATACAGACTCTCACACTTCAGGAACAATTAGTTTTGGTGAAGCCAGTGATGTTTCAGTTTCAGGTGAAGGAGTAGTCACAACTCCTCTGGTCTCTGAGGAAGGTCAGACACCTTATCTAGTCACACTGGAAGGCATAAGTGTTGGAGATACATTTGTGGCTTTTAATTCTTCAGAAATGCTTTCCAAGGGGAACATGATGATTGATTCGGGTACACCGGCAACGTATTTGCCACCAGAGTTTTATGACCGTTTAGTAGAGGAATTGAAGGTACAGAGTAGCCTGGTACCCATTGAGGATGACCCTGACTTGGGCACACAACTCTGTTACAGAAGTGAGGCAAATTTAGAAGGGCCAATCTTGACGGCTCATTTTGAGGGGGCAGATGTGCAGTTGATGCCAATACAAACCTTCATTCCACCAAAAGATGGGGTATTTTGCTTTGCAATGGCTGGCACTACTGATGGAGACTATATATTTGGCAATTTTGCTCAATCAAACATTTTGATTGGATTTGATTTAGACACAAGGACAATCTCCTTTAAGCCAACTGATTGCACCAATCAGAACAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00051	357449	361848	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000051s00003449.1	PF14543.1	TAXi_N	74	246	4.10E-39
Glyur000051s00003449.1	PF14541.1	TAXi_C	270	413	1.50E-21
Glyur000051s00003449.1	PF14543.1	TAXi_N	458	571	2.00E-19
Glyur000051s00003449.1	PF14541.1	TAXi_C	597	741	6.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.205
SRR1783600	control	1.294
SRR1783602	moderate drought stress	1.411
SRR1811619	moderate drought stress	1.444

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.317
DRR006520	Root Summer glycyrrhizin high producing strain	1.659
DRR006521	Root Winter glycyrrhizin high producing strain	0.430
DRR006522	Root Winter glycyrrhizin high producing strain	0.407
DRR006523	Root Summer glycyrrhizin low producing strain	1.005
DRR006524	Root Summer glycyrrhizin low producing strain	1.138
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.305
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.231

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.937
SRR2868004	Drought Stress (root)	1.095
SRR2967015	Control (root)	1.088

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.584
SRR9715740	Leaf	0.060
SRR9715741	Leaf	0.209
SRR9715739	Root	1.315
SRR9715742	Root	0.703
SRR9715743	Root	0.594

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.136
SRR8749028	MeJA induced 9h	0.101
SRR8749029	MeJA induced 9h	0.068
SRR8749030	Uninduced	0.034
SRR8749031	Uninduced	0.158
SRR8749032	Uninduced	0.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.168
SRR8400027	Control - Root	2.064