Gene detail

Gene detail information of Glyur000051s00003441

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43190.3	2.00E-55	ribonuclease P family protein
NR	XP_003537892.1	0	PREDICTED: ribonuclease P protein subunit p29-like [Glycine max]
trEMBL	tr\|I1LG21\|I1LG21_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G01420.3}

Sequence

Transcript Sequence

>Glyur000051s00003441.1
CGTGGGCTGCCCCAGTCACCCTACCCTTCACCACAAAACGCCGAAAGCTCGCTGCAGAGTCCCACGCCACCGCACCACGCACGAGCACTGACCGGTACAATTCATGGCTGCAGATTCAAGGAAACGCGCATTGGAGGCTTTGGAGAGAAGAATTGTTGTTGCCAAAGCTGAAGTTGTCCAAAAGGAAAAGAAAAACAAAAAGGCTATAATTGAAGCTGCGAAATCACCTGTTGTTGCAGTTTCTACTTCTAATGATTCTTCCTTGCATTTACGTTGTCCTTCATCAGAAACACACAAGAAAGGGAATTTCAGTTTTTCTGGTCATTCCACTTCGCAAGACATTGAAGATGGTCCAGAATATGCCCAACTTTCTCTGAATGTAAATGAAAATCTGCTCACAACTAATGAGGAGTTTTCTGCCGAAAGAGGAGGTTCAATTCTTGGAGTATTGCACGAACTTCTTCAAAAGGGAGATGCAGCCCAAAAGTACATGCAAGGATCTAGAAACATGAAAATTCCCAACTGGATCCTTCTTGATAATCATGTACAGGGACGTTCACTTTCTTCATGTTCTCAAAGTAGGGCTTTGCGAATTCATTCAAAACGCTCTAAGAAGCACATGTCCATGAAACAGCATAAAAAGCATGGATCATTGGATCTTCCTCAAGAGTTCCATAAATTTGATATTTTCAAGCCAATGCATGAGATGTGGAAAGACTATATAATGCCGCTTCTTAAATCCTGCGGGAAAAATCAATTGGCTCAATGTCTCCTTGGTGCAGATCTACACGGGGCTTTCATTTTAGTTGTGGAGTGTAAGATAACCCATTTTATCGGAATTTGTGGCATCATGATTCGTGAAACTGCAGAAGCGTTTGGGATAATTACTGAAGATAATAAATTCCGAGTTGTTCCTAAAAAGGTTTCTGTATTTGTATTCCAAGTTGATTGCTGGAAAGTCACTCTGCATGGAGATAAACTCGGTTCAAGAAAGGTTGGATTATGATAATAGTGACGATTCTTCAATTGCAGTTAACATCTTCGTCTCACGTGAGGCCTTTTCTATCAGTTTTTGATGATGGTACTTCATCATCATCATCTTATTGAGCGAACCTTGATATTGTTTTGTGGTTTCTATGAATGTGTGCAAGAAAGGTAAGTTGGCCGGCAAAAAAACCTTGTTATTGATGCTAGCTTCCACAGAAGTTGATGGAACCAAGTCAAATTTTGACCGTGATGTAATNCAATCCACTTGCCTGCCCTCAAACACAGCAGATACAACAGCCCAGTATTCAGATTCTTCCTGCTCAGTAAAATTGATAACCTGGATGAATGTTGGCAGAAGGCGCCCAAATTGGTCTTGCTGCGAATGATGCAAATAATTATAGAAAGTTCTTCAGTAAAGCAGTCTGATACAAACCCATTATAGGTCTAAGAAAACCAGTATGTAATTTTAAATGCTCAACTGCTCAGAAAGACATACCTTGTGATACATACCATCTCGACATAGTGTGTACTTCTCTAGACAAGTACACCAATCCCCATGTCCTGGTTCAAACCACCATTCATCAGACACCTGAAGCGGGTCAGCAGTAAGCAACTTGACAAGGTAATTTAAAATAAAATATAAAGAAAAGATGAGACAATGGCAGAGACTCGTGGCTGAGAGGACAATGCAGCATGAGTGAAGGAAGCTAGTGGGAAGTTTAACTACCACACAGTGATCCATCCAGGCATTGCCTTCTTAGTAAGTATAATTAGTTAATTCATGTCCACAAACCATTCATCACAAGCAATCTATATTCAAATCTTATATCAATAGACGTTTAAACTTAGCAGCAAACCTTTTTGTATAGTCGTGCATAAGCTTCCCATCGCTTAATCTGGAAATAAGATCTTCTGTCAGCAACTGCTTCAGAAGCTGCTAGCCCAAAGCTTACAGCAACTAGCAATTCTCTTTCATCATTTTCTACACTGAAAAGGTAATGAACGCGAGCTACAATCAGTGTGGATAGCCTTATAACATAGCATCCATTAGAATTTGAANTGTTACATACCTGATGATAACGGCAGCAAGTAAGTGACTTCCTTCTACTCTGAGTACGGGATGTCCAGCTTTCAGTGACTTATATTTACTTAATAAAATATCTGAAGAATTTTCCTCTTCTATATCCTTAGAGAAATAGGAGGATGCCTCTGTTTCGGGTTCATCCATGCTGTCTATGGACGAAAAAGGATTTCCAGTTTCCTTATAAAGCCAATGTGCGGCAAGTCCATGTTCAGCATACTCATGCATCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00051	317867	324074	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03538	POP4, RPP29	EC:3.1.26.5	RNA transport	map03013
			Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

biological_process

GO:0006364 rRNA processing

GO:0006379 mRNA cleavage

GO:0008033 tRNA processing

cellular_component

GO:0000172 ribonuclease MRP complex

GO:0030677 ribonuclease P complex

molecular_function

GO:0003723 RNA binding

GO:0004540 ribonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000051s00003441.1	PF01868.11	UPF0086	221	296	6.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.520
SRR1783600	control	2.245
SRR1783602	moderate drought stress	3.210
SRR1811619	moderate drought stress	3.056

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.016
DRR006520	Root Summer glycyrrhizin high producing strain	6.229
DRR006521	Root Winter glycyrrhizin high producing strain	4.649
DRR006522	Root Winter glycyrrhizin high producing strain	4.256
DRR006523	Root Summer glycyrrhizin low producing strain	4.863
DRR006524	Root Summer glycyrrhizin low producing strain	4.689
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.424
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.462

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.904
SRR2868004	Drought Stress (root)	4.675
SRR2967015	Control (root)	4.679

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.406
SRR9715740	Leaf	4.106
SRR9715741	Leaf	3.630
SRR9715739	Root	1.678
SRR9715742	Root	3.211
SRR9715743	Root	2.643

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.998
SRR8749028	MeJA induced 9h	2.738
SRR8749029	MeJA induced 9h	2.660
SRR8749030	Uninduced	1.203
SRR8749031	Uninduced	0.996
SRR8749032	Uninduced	0.981

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.229
SRR8400027	Control - Root	6.416