Gene detail information of Glyur000051s00003440 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G54130.1 | 5.00E-41 | RELA/SPOT homolog 3 |
| NR | KHN25607.1 | 0 | Putative GTP pyrophosphokinase [Glycine soja] |
| COG | YP_003495316.1 | 5.00E-67 | GTP pyrophosphokinase [Deferribacter desulfuricans SSM1] |
| Swissprot | tr|Q9SYH1|RSH3C_ARATH | 4.00E-43 | Probable GTP diphosphokinase RSH3, chloroplastic (Precursor) |
| trEMBL | tr|K7K5D5|K7K5D5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43933.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 311076 | 320046 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003440.1 | PF13328.1 | HD_4 | 127 | 294 | 7.40E-45 |
| Glyur000051s00003440.1 | PF04607.12 | RelA_SpoT | 443 | 562 | 1.70E-31 |
| Glyur000051s00003440.1 | PF02824.16 | TGS | 802 | 854 | 9.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.600 |
| SRR1783600 | control | 6.632 |
| SRR1783602 | moderate drought stress | 6.169 |
| SRR1811619 | moderate drought stress | 6.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.996 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.979 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.769 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.701 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.906 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.037 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.755 |
| SRR2868004 | Drought Stress (root) | 16.187 |
| SRR2967015 | Control (root) | 13.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.091 |
| SRR9715740 | Leaf | 47.016 |
| SRR9715741 | Leaf | 35.618 |
| SRR9715739 | Root | 0.899 |
| SRR9715742 | Root | 3.276 |
| SRR9715743 | Root | 2.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.430 |
| SRR8749028 | MeJA induced 9h | 12.114 |
| SRR8749029 | MeJA induced 9h | 7.253 |
| SRR8749030 | Uninduced | 4.029 |
| SRR8749031 | Uninduced | 3.091 |
| SRR8749032 | Uninduced | 3.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.490 |
| SRR8400027 | Control - Root | 19.377 |