Gene detail

Gene detail information of Glyur000051s00003423.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03415.1	2.00E-101	Transcription factor DP
NR	XP_004505605.1	0	PREDICTED: transcription factor-like protein DPB-like [Cicer arietinum]
Swissprot	tr\|Q9FNY2\|DPB_ARATH	3.00E-134	Transcription factor-like protein DPB
trEMBL	tr\|I1JAG8\|I1JAG8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G43800.1}

Sequence

Transcript Sequence

>Glyur000051s00003423.1
ATGGAGCCTGGGGAAGATACTAGCTGGGAATCTTCAGGCTTGCCTCAAAACTCTAGGCTTATTTCCAAGCTTTTAGGTAAGCGACTTACTAGGATGGGAACACAACCCCAGCAAACAAGTCGGGAGGAGGACGACGAGGAGCTGCCAGGTCGTGGAGCTACAATTTCTGGTCAATCAATGTCAACAAGCAGAAGTGTTGGGTCACCATCCAGCCGGAGTGAGCAGACAATGGCAACACCTGCCAGTGATGCCACTTTTCTTAGATTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTTCTGATCCAAGCAATAGTGCCTCATCCCCTGATCAGCAACAATATGATGAGAAAAATATTCGTCGAAGGGTCTATGATGCTTTGAATGTTCTGATGGCTATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCAGAATGATATTGAAGAACTAAAGACTGAGCGTCTTGGGCTGAGGAGTAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAACTGGAGGAACAAGTCTTCAGAACCTTATACAACGAAATGAGCAATTATATAGCTCAGGAAATGCTCCCAGTGGAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGACAATTATGTTCTGAAGGCAATGAAATTTTGTGAGAGACCTCAAAACGATAATACGGCACACAATCCCACAGATGGAGGTGAAGGTTCTAGCATGTCAGGCATGTACCAGACACAGGTTCCTACTTCAGTTTCAAACCCGCCAGTTAGGCCTCCCTCATCACCACCACTCCCTGGAATATTAAAGGCAAGAGTTAAGAGTGAGCATTGATTGACAATTTTGTCAAATTGCCTTGCCTTTTTAGGCATGTTTGTATATTTTGTAAAGTAATTTGCCGGCAATTAATTGTCCTTCATGATAGTAGCTCTATCAGCACAGCCAAATCACTATGTATCTGTAGGTTAGAAGCAAATCAGGCTGCTTGCTTTCCCTCTATCCTCCTTATGGGTTGATTTTGGCAAATTCTTCGCTAACCGTCCATATCCATTATTTACTACCTTAACTGATTTCTTTTGTAACATTTTCTCTGTATTTGCTCTTATGTAGTTATAATAGAGAAATAGGTTTGTATTAGCCCATTGAGATCATGGAATGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00051	212227	215765	-

Gene family

Gene family	subfamily
Transcription Factors Family	E2F-DP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0007049 cell cycle

cellular_component
GO:0005667 transcription factor complex

molecular_function
GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000051s00003423.1	PF02319.15	E2F_TDP	122	204	3.80E-25
Glyur000051s00003423.1	PF08781.5	DP	211	323	1.50E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.461
SRR1783600	control	40.753
SRR1783602	moderate drought stress	56.199
SRR1811619	moderate drought stress	55.845

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.202
DRR006520	Root Summer glycyrrhizin high producing strain	41.088
DRR006521	Root Winter glycyrrhizin high producing strain	60.821
DRR006522	Root Winter glycyrrhizin high producing strain	59.050
DRR006523	Root Summer glycyrrhizin low producing strain	49.905
DRR006524	Root Summer glycyrrhizin low producing strain	48.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.948
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.219

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.064
SRR2868004	Drought Stress (root)	59.396
SRR2967015	Control (root)	63.587

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.168
SRR9715740	Leaf	36.907
SRR9715741	Leaf	47.410
SRR9715739	Root	14.627
SRR9715742	Root	29.806
SRR9715743	Root	28.268

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.146
SRR8749028	MeJA induced 9h	57.806
SRR8749029	MeJA induced 9h	45.869
SRR8749030	Uninduced	39.879
SRR8749031	Uninduced	32.627
SRR8749032	Uninduced	22.237

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.149
SRR8400027	Control - Root	53.270