Gene detail

Gene detail information of Glyur000051s00003417

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65060.1	0	4-coumarate:CoA ligase 3
NR	NP_001237270.1	0	4-coumarate:CoA ligase isoenzyme 3 [Glycine max]
COG	YP_003291469.1	2.00E-126	AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
Swissprot	tr\|P31687\|4CL2_SOYBN	0	4-coumarate--CoA ligase 2
trEMBL	tr\|Q8S5C2\|Q8S5C2_SOYBN	0	4-coumarate:CoA ligase isoenzyme 3 {ECO:0000313\|EMBL:AAC97599.1}

Sequence

Transcript Sequence

>Glyur000051s00003417.1
GCTGACCCATAACAACAATAATAATATTAATAATATTAAAAAAATAGGAGGCAGCGGGAAAGGGACAGAAAACTGGGTAGGTAGGTAAGTAAGAAAGAGTGGCTGGCTGGCTAGAAGGAAGAAGGAAAGAAGAACGCATGGTTTTGAACGTGTTACTTGTCCCTGCCTCTCACCTCTCCATTTTCCCTTCCAAACCAAAACCATCATTCACCCCCTCACCTACCCACCCTCCCCTCTTTGAGTCTCCTTCACCAGTCTCACTTCCCATATTCTCTCACCCTGCCATATATTAGGACACTTCCCCTCTTCATTTCACCCTCAAATTCTCTCTCTCTCTCTCTATCACCGGCCGACCCCTTTCAGTCTTCATTCCCTTCCAAAAAACAACTAACCCATTTTCTCCCTCCAGTTCAATTTGGGTAATAACCAAACCCACATAAACAAAACAAAAACACACACACACACACACACATTAGAACAACACAATGTTATCACTGGCTCCTTCCGTTGAAACCAAACAGAGCCCTGCAGAAGCATCTTCCCCCAAAAATGCTATCACCACCAGCGAGCAAAACCAAAATCAACCCCATCAGAGTGGCCACGTATTCAAATCGAGATTACCAGACATACCCATTTCCAACCACCTTCCCCTCCACACCTACTGCTTCGAGAAGCTTCCCGAAGTCGCCGACCGTCCCTGCCTCATCGTCGGCTCCACCGGAAAAACCTACACCTACGCCGAGACCCANCTCATGTCCCGGAAGATCGCCGCCGGTCTCTCCAAGCTCGGCGTCCACAAGGGCGACGTCGTCATGATCCTCCTCCAAAACTCGCCGGAATTCGTCTTCACCTTCCTCGCCGCCTCCATGATCGGCGCCGTCTCCACCACCGCCAATCCATTCTACACCACCGCCGAGATCTTCAAACAGCTCAAAGCCTCCAAGACGAAACTCATCATCACACAGGCAATGTACGTCGACAAGCTCCGCCACAACAACAACGACGATGGTACTGATCATGATCNTGATCACGATCAGTACCCGAAGCTTGGGGAAGACTTCAAGGTGGTGACGGTGGATGATCCACCGGAGAATTGCCTTCACTTCTCGGTGTTATCCGAGGGGAAGGAGGAGGAATTGCCGGAGGTTGAGATCCACCCCGACGACGCGGTGGCGCTTCCGTTTTCTTCGGGGACAACGGGGCTACCGAAGGGGGTGATTCTAACGCACAAGAGCCTCACGACTAGCGTGGGGCAACAAGTAGATGGAGAGAATCCGAACCTGTACATGACACATGACGATGTTGTGTTGTGCGTGCTTCCGTTGTTTCACATATTCTCTCTCAACAGTGTTCTACTCTGTNCGCTTAGGGCGGGGAGTGCTGTTCTTCTCATGCACAAGTTCGAGATTGGGGCGTTGCTCGATTTGATTCAGAGGCATAGAGTTAGTGTTGCGATGGTGGTGCCGCCGCTGGTGCTGGCTCTTGCTAAGAACCCAACGGTGGCTGAATTTGATCTGAGCTCTATACGGTTGGTGCTGTCGGGGGCTGCGCCGTTAGGGAAGGAGCTCGAGGAGGCTCTCCGGAGCAGGGTGCCTCAGGCTGTTTTGGGACAGGGATACGGGATGACGGAGGCAGGGCCGGTGCTGTCGATGTGCTTGGGATTTGCAAAGCAGGCATACCCAACAAAGTCAGGCTCATGTGGCACTGTTGTGAGAAATGCAGAGCTCAAGGTTGTTGACCCTGAAACCGGTCGCTCTCTTGGCTATAACCAACCCGGTGAAATTTGCATCCGAGGCCAACAAATCATGAAAGGATATTTGAACGATGATAAGGCCACAGCAACGACTATCGATGAGGAAGGTTGGCTTCACACCGGTGATGTTGGCTATATAGATGATGATGATGAGATTTTCATCGTTGACAGGGTCAAGGAACTCATCAAATTCAAAGGCTTCCAAGTGCCGCCAGCAGAACTTGAAGGCCTTCTAGTTAGCCATCCCTCTATAGCAGATGCAGCTGTTGTCCCGCAAAAGGATGTGGCTGCTGGTGAAGTTCCTGTTGCCTTCGTGGTGAGGTCAAATGGCCTTGATCTAACTGAAGAGGCTGTAAANGAGTTTATATCTAAGCAGGTGGTGTTTTATAAAAGACTACACAAAGTTTACTTTGTTCAAGCAATTCCCAAGTCTGCTTCAGGAAAGATATTGAGGAAAGACCTCAGAGCAAAGCTAGAAAACGGCACCCAGACGCCCTAGAGGCTANAGGCCAGAACCATTTTTATTCTTTTTTTTGGCAACATCTTCCATATTTGTTTATTTATATTCTATAGNTCTCATGTGTAGTAATTTATGAATTGATGCTTCAGGGCATAAAGCCAACCCAAGAAGTAGTTAAGTTCTTTGTATGTATACACATTCTATTCTATTCTATTGTACTTTTATTATGTCCGTTGCCTGAGCTTCTCTCTGTGGTCCATTGTACTTGTAGTGTGAATTGAGATCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00051	184457	190074	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01904	4CL	EC:6.2.1.12	Phenylalanine metabolism	map00360
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000051s00003417.1	PF00501.23	AMP-binding	68	487	5.60E-101
Glyur000051s00003417.1	PF13193.1	AMP-binding_C	496	571	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.861
SRR1783600	control	27.596
SRR1783602	moderate drought stress	23.374
SRR1811619	moderate drought stress	22.780

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.008
DRR006520	Root Summer glycyrrhizin high producing strain	7.660
DRR006521	Root Winter glycyrrhizin high producing strain	16.588
DRR006522	Root Winter glycyrrhizin high producing strain	15.659
DRR006523	Root Summer glycyrrhizin low producing strain	11.950
DRR006524	Root Summer glycyrrhizin low producing strain	12.205
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.661
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.685

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	125.461
SRR2868004	Drought Stress (root)	206.696
SRR2967015	Control (root)	135.792

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	93.999
SRR9715740	Leaf	34.068
SRR9715741	Leaf	93.807
SRR9715739	Root	58.780
SRR9715742	Root	101.812
SRR9715743	Root	84.273

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.908
SRR8749028	MeJA induced 9h	23.311
SRR8749029	MeJA induced 9h	20.434
SRR8749030	Uninduced	250.061
SRR8749031	Uninduced	264.656
SRR8749032	Uninduced	132.003

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	77.185
SRR8400027	Control - Root	75.697