Gene detail

Gene detail information of Glyur000051s00003405

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G06710.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004511412.1	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06710, mitochondrial-like [Cicer arietinum]
Swissprot	tr\|Q9M9X9\|PPR18_ARATH	Pentatricopeptide repeat-containing protein At1g06710, mitochondrial (Precursor)
trEMBL	tr\|G7K547\|G7K547_MEDTR	PPR containing plant-like protein {ECO:0000313\|EMBL:AES93766.1}

Sequence

Transcript Sequence

>Glyur000051s00003405.1
ATGAGGAAGAGGGAGTTGAAGACTCTCCCTCTACTGTGTCGCTCTCTGCGCTCTTTCCGATTCTCTACTCGTCAAGTTTCACAAGACACACACACTCTCCAAGGATTGCTTCATCCCGACGACACCGTTTTTCAGAATCTCCCAACCCCAAAACCCACCCCTGATTTGTCACAAGACTACGCATTCCTCCGCAACACTTTGNTCAATTCTACTCCCCAATCCGACACTGGTTCTGGTTCTGGTGAGTTCCCCGATGAGGTTGTGTCGATTTCAAACGCCATTAGGGCAGGTGGGTTTGGCATTGAAACCCACAATTTCTTTAGGCAGTTCCGTGGTAGGTTAAGCGAGTCTCTGGTAGTGCAGGTGATGAACCATGTTAAAAACCCTGAGTTGTGTGTCAAGTTTTTCTTGTGGGCCGGTCGCCAAATCGGTTACACTCACACCCCTGCCGTGTATGACGCGCTGCTTGAGTTGTTGTTATTGGGAAGTAGTGGCAATGGCAATGACAGAGTGCCCGAAAAGTTCTTAGTAGAAATCAGGGACGGTGACANGGAACTGCTTCACAGGTTGCTCAATTTTCTGATTCGAAAGTGTTGCCGGAATGGTTGGTGGAATATGGCTTTGGAAGAGTTGGGCAGGCTCAAGGATTTTGGGTACAAGCCTTCTCGAACCACTTATAATGCTCTGATTCAGGTTTTTCTTAATGCTGAGAAACTGGATACGGCTTATTTGGTTAAGAAAGAGATGTCAAATTATGGATTTTGTATGGATGGGTATACTCTGAGTTGTTTTGCCTATTCCCTCTGCAAAGCAGGGAGGTGCAGGGATGCTCTTGCTTTGATTGAGGAGGTGGAGGTGGAGGGGGAGTTTGTGCCCGATACGGTTTTCTATAATAGGATGGTTTCTGGGTTATGTGAGGCTTCGCGTTTTGAAGAAGCCATGGATATCTTGAACAGAATGCGGTCCAATTCTTGCATTCCTAATGTTGTCACTTATAGGATTTTGCTGTCTGGATGTCTGAGAAAAGGGCAGCTGGGCAGGTGTAAGAGGATTCTGAGTATGATGATTACGGAAGGCTGTTATCCGAACCGTGAGATGTTTAATTCTCTTGTTCATGCTTATTGTAAATCGAGGGATTACTCTTATGCCTATAAGTTGTTTAAGAGAATGCTAAAATGTGGGTGCCGNCCGGGGTATCTGATTTATAACATATTCATTGGTGGTATATGTGGCAATGAGGAACAGCCTAGCTCGGATGTTTTGGAATTGGCAGAAAAAGCTTACGGTGAGATGCTTGATTCAGGGGTTGTATTAAATAAGGTCAATGTCAGCAATTTTGCACGGTGTCTTTGTGGAGCTGGGAAGTTTGATAAAGCTTTTAAGATTATATGTGAAATGATGAGTAAAGGTTTTGTTCCNGATGATAGCACATATTCTAAAGTGATTGGTTTCCTTTGTGATGCCTCCAAGGTAGAGAAAGCTTTTTTGTTGTTCGAAGAAATGAAAAGGAATGGCGTTGTTCCCAGTGTTTACACCTATACAATTTTAATCGATAGCTTTTGCAAGGCTGGTCTTATTCAACAGGCTCGCAAATGGTTTGATGAAATGTTGAGGGATGGTTGCAACCCCAATGTGGTGACTTATACTGCTCTTATTCATGCATACCTGAAAGCAAGAAAGGTGTCTGATGCAAATAAACTATTTGAGATGATGCTTCTTGAAGGTTGCAAGCCTAATGTTGTTACATATACGGCTTTAATTGATGGNCATTGTAAGGCTGGGCAAATTGAAAAAGCTTGCCAGATCTATGCTAGAATGCGAGGTGACATAGAATCCTCTGATATGGACATGTATTTTAAGGCAGATCACAACGACTGTGAAGGACCGAATGTTATTACATATGGGGCTTTAGTGGATGGTTTATGCAAAGCAAACAGGGTTAAAGAGGCAGGAAAAATTGAACAGTGTCTTGAGCTCTTTAGAGATATGTGCTCAAAGNGCTGCGCTCCAAACTTTATAACCTACAGGGTCTTGATAAGTCATTGTTGTTCCAATGGCCTTCTTGATGAAGCTTACATACTTTTAGATGAAATGAAACAAACATATTGGCCAAGGCATATATCAAGTCACCGTAAAATTATTGAGGGCTTTAACCGAGAGTTTATAACCTCACTTGGGCTTTTAGATGAGTTAAGTGAGACTGAATCAGTGCCCGTTGATTCTTTGTACAGAATTTTGATTGATAATTTCATCAAGGCTGGAAGACTGGAAGTTGCATTGGATCTGCTTGAAGAGATTTCATCATCTTCAAGCCTTGCAATTGCCAACAAATATTTGTATGCCTCTTTAATTGAGAATCTGTCACATGCAAGTAAGGTTGATAAAGCCTTAGAGCTGTATGCAAGCATGGTAAGTAAGAGTGTTGTTCCGGAGCTTAGCACACTTGTCCACCTCATCAAAGGCCTTATCAAGGTTGATAAGTGGCAAGAAGCACTACAGTTATCAGACAGCATATGCCAAATGGATATCTGCTGGCTTCCTGAAGAGGCAACCAGTATAAATTAGACTTCTGTTGTACAGGTTGAGAGTAACTAAAGGAAAATGAATACAGGCGGGATGGAAGAAATGGTCAATCTGGTAATTGCAATAGCAATAACGGAAGCAGAAACAGGAGATTCTGAAGAAATCTTTAAAAGATGCTCTTCATATTCCATTAATNTCCAAGTTTCAAAATCCTGTGTACTTTTGTCCGCCTATCATTACATCACGCAGGGGGTGATGGTTTTATGATCTATGATCGGGGCATGCTAATTGATGTCAAGGAACAAGGGCAATGCTTCCCTTCCAATTCCAACATCATGATTTCTTTATAATGGAGTGCTCGGGCGAGTTTGCGAACGGGGATTTGAGCTTAAGCCAATCAGGAGTATGCTACTTGTAAGAGTCAAGCCCAGATATATGTTATATGGAGATGTTTCCCCTCTTCTCAAGAATTGGTTGGCTGCAATCACAGGATCCTTCTTCATTTGAAGTGGGCAAGTTGATGTGCTGTGTTATGATTTATGATGGGGAGTCAACAAAAGTTGCATGCTTCTAAGCGCTAGTATGGCAAATATTTCATCATTTGTTGATCTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00051	103393	107720	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000051s00003405.1	PF01535.15	PPR	192	209	0.63
Glyur000051s00003405.1	PF01535.15	PPR	225	254	0.039
Glyur000051s00003405.1	PF01535.15	PPR	266	288	0.76
Glyur000051s00003405.1	PF13041.1	PPR_2	292	339	4.20E-15
Glyur000051s00003405.1	PF13041.1	PPR_2	363	410	1.40E-09
Glyur000051s00003405.1	PF01535.15	PPR	448	471	0.0068
Glyur000051s00003405.1	PF13041.1	PPR_2	477	522	2.60E-15
Glyur000051s00003405.1	PF13041.1	PPR_2	543	592	4.50E-19
Glyur000051s00003405.1	PF13041.1	PPR_2	629	684	6.30E-13
Glyur000051s00003405.1	PF01535.15	PPR	743	767	0.059
Glyur000051s00003405.1	PF01535.15	PPR	780	807	0.14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.821
SRR1783600	control	2.822
SRR1783602	moderate drought stress	2.872
SRR1811619	moderate drought stress	2.738

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.833
DRR006520	Root Summer glycyrrhizin high producing strain	3.785
DRR006521	Root Winter glycyrrhizin high producing strain	1.104
DRR006522	Root Winter glycyrrhizin high producing strain	1.065
DRR006523	Root Summer glycyrrhizin low producing strain	2.959
DRR006524	Root Summer glycyrrhizin low producing strain	2.836
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.765
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.809

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.394
SRR2868004	Drought Stress (root)	5.481
SRR2967015	Control (root)	5.881

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.385
SRR9715740	Leaf	1.464
SRR9715741	Leaf	1.759
SRR9715739	Root	0.197
SRR9715742	Root	1.636
SRR9715743	Root	1.602

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.424
SRR8749028	MeJA induced 9h	2.600
SRR8749029	MeJA induced 9h	1.902
SRR8749030	Uninduced	1.597
SRR8749031	Uninduced	4.416
SRR8749032	Uninduced	4.006

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.902
SRR8400027	Control - Root	5.380