Gene detail information of Glyur000051s00003403.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17900.1 | 7.00E-68 | PLATZ transcription factor family protein |
| NR | XP_003537704.1 | 7.68E-118 | PREDICTED: uncharacterized protein LOC100792668 isoform X1 [Glycine max] |
| trEMBL | tr|I1LFX0|I1LFX0_SOYBN | 3.00E-118 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G01100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 97804 | 99746 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PLATZ |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003403.1 | PF04640.9 | PLATZ | 85 | 156 | 1.00E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.942 |
| SRR1783600 | control | 16.748 |
| SRR1783602 | moderate drought stress | 26.053 |
| SRR1811619 | moderate drought stress | 26.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.152 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.382 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.425 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.230 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.957 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.349 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.531 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.033 |
| SRR2868004 | Drought Stress (root) | 90.817 |
| SRR2967015 | Control (root) | 60.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.052 |
| SRR9715740 | Leaf | 25.234 |
| SRR9715741 | Leaf | 30.711 |
| SRR9715739 | Root | 5.687 |
| SRR9715742 | Root | 16.101 |
| SRR9715743 | Root | 11.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.027 |
| SRR8749028 | MeJA induced 9h | 97.839 |
| SRR8749029 | MeJA induced 9h | 33.622 |
| SRR8749030 | Uninduced | 114.030 |
| SRR8749031 | Uninduced | 194.742 |
| SRR8749032 | Uninduced | 183.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 58.914 |
| SRR8400027 | Control - Root | 35.148 |