Gene detail information of Glyur000051s00003401 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13270.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_003516750.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g13270, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q9LYU9|PP378_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g13270, chloroplastic (Precursor) |
| trEMBL | tr|I1JAN8|I1JAN8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G44440.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 92326 | 94537 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003401.1 | PF01535.15 | PPR | 130 | 156 | 0.17 |
| Glyur000051s00003401.1 | PF01535.15 | PPR | 158 | 188 | 6.90E-05 |
| Glyur000051s00003401.1 | PF13041.1 | PPR_2 | 256 | 304 | 3.10E-08 |
| Glyur000051s00003401.1 | PF13041.1 | PPR_2 | 357 | 405 | 7.30E-09 |
| Glyur000051s00003401.1 | PF13041.1 | PPR_2 | 458 | 499 | 1.40E-09 |
| Glyur000051s00003401.1 | PF01535.15 | PPR | 524 | 546 | 0.00014 |
| Glyur000051s00003401.1 | PF01535.15 | PPR | 590 | 618 | 0.022 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.910 |
| SRR1783600 | control | 1.776 |
| SRR1783602 | moderate drought stress | 1.668 |
| SRR1811619 | moderate drought stress | 1.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.023 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.758 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.807 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.768 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.532 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.701 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.230 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.767 |
| SRR2868004 | Drought Stress (root) | 3.741 |
| SRR2967015 | Control (root) | 2.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.396 |
| SRR9715740 | Leaf | 3.651 |
| SRR9715741 | Leaf | 3.303 |
| SRR9715739 | Root | 1.062 |
| SRR9715742 | Root | 1.533 |
| SRR9715743 | Root | 1.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.185 |
| SRR8749028 | MeJA induced 9h | 2.348 |
| SRR8749029 | MeJA induced 9h | 1.799 |
| SRR8749030 | Uninduced | 3.257 |
| SRR8749031 | Uninduced | 9.520 |
| SRR8749032 | Uninduced | 4.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.319 |
| SRR8400027 | Control - Root | 3.385 |