Gene detail

Gene detail information of Glyur000051s00003396

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43630.1	3.00E-53	zinc knuckle (CCHC-type) family protein
NR	XP_006573853.1	0	PREDICTED: uncharacterized protein LOC100799306 isoform X2 [Glycine max]
trEMBL	tr\|K7K5H3\|K7K5H3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G44491.2}

Sequence

Transcript Sequence

>Glyur000051s00003396.1
ATGAGTGCAGAAAACAAGAAAATAAAACCAGAGCCTGATATTGAACTCTTTCTGCATAATGCTAACCAATGCAATTGGAAAAATGACTCAGGTGCAGGTGCAAATGCAGCTTCCAGAGTGGACATGACATTTGCTGCCTCTGACCCTCTATCTGAAATAGTTTGGTCTCCAGATAAAGGTTTGAGTCTTAAATGTGCCGATTCAAGCTTTTCTGATAAAAATAGTTCTCTTTTTCGGGATGTTGGACCGAACTGTATGGTTCTTGCTCAGCCACAAAGTGCTACTGGCGGCATGTCTACCACTGATAAGCCTATGGATGATGTTTTTGTAAAACCTACAGCTGTCGTATGCGCCAAGAGTGATAATGCTGCAACAGATACTCCCATTATGCATCCAATAAGTGATTCAGGTGTCAAGCCCGAGTGTAAAGCCTATGAAGAAAATGATATAGGATCTTGTGGTAATAAGGAGAAAATGAACACTGCAGAAAGAGCGCCTTATGTGCCTGACGATCAAAATGTGAANCTAACAAAAGACTGGGAGAAGAATACTGGTGATCAAGCCAACATTGGAACTGATAAAATATCTGGGGCAGAGGGAAACAAATTATCTGCTATTTCAGTTCAGGTTGACCAAAGGCCATTTGATAATATATTATGTCAATCAGATGAACCTAAACCTATCATGGAGCAAAATCCTTCACCAGGGAGACCTTCCAATGAAGGCATAGATATCTGTACTGGAAAAAGGACAGTTGTAACAGAAGATAACTTACATACTGTAGTTGAGCCTATAATTGAATATAAAGGCTCTGGTGCTCCAGAAACTAAGTTAACATCTTCCAGCAGGAGTCCTTTAGAAAAGCTGGAATCTAGTGCAGAGAATGATTTACGAACTGTTGACTGTGAAGCTGCTTGTGCTGCAACATGTGGAGTCATTGTTGATGAGATTAAAAACAAATCTCAGGACAATGAAACGGTGCTACTATGCGATAATGTTCTTCCAGTTTTGCATTCTCCGTGTAATAGCAGAATTCGTTTGACAAAAAACAAAGGCAAGGAAAAGTCCTTATCAGATGGGGATGCAGATGTAAGATTNTCAATGGAGGAAACTGACAGCCATTCAAGTGTTGAAAGCTGTAACAGCACTGGGATTTTTTCCACAGGTAAGAAGAGGCGTAACTTTGAACAGCGGTTGATAATTGGGAGTAAAAGAGTCAAAAAGCACATTGAAGAAACTTCCGGTTCCAAACCATACACTAAACAGGATAGTTCATTCATAAACTGGATTTCAAACATGGTGAAAGGACACTCACAATCAATTAAAAATGATTCAAACATTTTGGCTCTTACCCTTGCAAAACCAGATCACGATAATCTACGGTCTGATGAGAAACATACCACATGGAAAATGAATCAAGATTCTGAGCCAAAAAATACAGGATTCAAATCCATCTTCCAATCCATGTATTGTCCAAGTTTGAAGAATGTAGGAGCAAGAATGTTTCATCATGATGGAGAGGGTAGTGAGGATTTAGAGCAAAGTAACATGGTACAGGGAATAGATGCTACTCCGATAACCTGTTGTGCAGAGAACAATAGCCTTTCCAAAGGGTATCTGGAATCAAATAAGTTTGCAGCATCTACTGGGAGATATGATGCTGGTCCTTCCTCACAGCCTAACATTAAACCTTTAAATGTTTTTAACAGTCAGGAAAGCAGCAAAAATAACCCAGTGGAGAATNAAAATTGTTCCTTCTTGGGCCTTAGTAAGGACAAGGAAGAAATGGCATCACATTCATCTTCAACCAAACAAAATACAAATGACACTGAGAATGTCGATTCCAGTGCACCATCAGAGAGAAAGGAAGCAGAGAACATCTGTCACAGGAGAGATAATCTACGGAGTCTGTGGATAACTCGATTTTCGCCAAAATCCACTGCCCCCTTGATTACTTCTGGTCACCTCAATGAGAGATATGGATCTCAAGTCCACTCCAATTATTTNTCAAAGCTCCCTGATTCCCATAAAAACATTTCTTATCTGAACAACTGTAGAATTGAAGAAACTGGACAACAACCTGCTAATGACACAGAAGCTTCCACTGGTCTTGAGGAAGACAAGGGAAATAACAAACATAAATCAATGTATAAGTTCAACAGCCTTTCATCTTCCCTGGGATTCAAGAATTCAGAGCTAATGGCTTCAATGTTTGCAAGGAGATTTGGTGCCATCAAACATATCATACCAACAAACAAAGCAGATTGTACCTCACAGGTAAACTTGTTTTGTTTGTTTTGTGGGACAAGAGGTCACCAACTCTGTGATTGCTCAGCTATTGCGGAGAGGGAGCTAGAAGATCTCCAGAAGAATATAAATTCATTTGGAGGGTTGGATGAAAGTCTTTGTCTATGCATTAAATGTTTTCAGCCCAACCACTGGGCAATTTCATGTCCCAATTCAATCTCAACAAGGAAACATGATTCGGAAGTTAAAACCTTGGTTGATGATTGTATTCCTAGTGGAAAACATTTTATCCCATGCAATGAAGGGAGCACAAGGCTGCTGACTGATGGGGCTGACCAAATTTTATCTGGCGGTACTATCCACGATGGAACTGATCACCGAGCAGATCAGAATATTAATTTGAAGCGAAAATCAAATGACATCATAACCTTCAAGATAGAATGCAATGCATCATTCAAGAAATGTCGTGGTTCTAGTTCAGAGGAGAACAGATTCAAAGAAAAAACCATAACATCTCCATATGGAATGGCTGAAAGTCAGATTTCAAACGTGCCAAAAGGAATCTGTGATGCAGTGAAAAAGCTTCAATTGTCCCGCACTGACATTCTGAAATGGATAAATACCCAAGGCTCAATCTCGCAACTTGATGGTTTTTTCTTGCGCCTGCGGCTTGGGAAGTGGGAAGAAGGGCTTGGAGGAACTGGATACCATGTGGCATATATAAATGAGACCGAGAGACTGAGCTCAGAGCCAAATACGAGAAAATCTGTCTCAGTGAAAGCAGGGGGGATCAAATGTATGGTTGAAAGTCAGTATATATCCAATCACAATTTTTTTGAGGAAGAAATCATGGAATGGTGGTCTACCACCTCAGAAGCTGGTGTTGAGATTCCATCTGAAGAAGATCTGCTAGCAAAACTTCAAAAGAAAAAAATGTTAGGTCTTTAG

Protein Sequence

>Glyur000051s00003396.1
MSAENKKIKPEPDIELFLHNANQCNWKNDSGAGANAASRVDMTFAASDPLSEIVWSPDKGLSLKCADSSFSDKNSSLFRDVGPNCMVLAQPQSATGGMSTTDKPMDDVFVKPTAVVCAKSDNAATDTPIMHPISDSGVKPECKAYEENDIGSCGNKEKMNTAERAPYVPDDQNVXLTKDWEKNTGDQANIGTDKISGAEGNKLSAISVQVDQRPFDNILCQSDEPKPIMEQNPSPGRPSNEGIDICTGKRTVVTEDNLHTVVEPIIEYKGSGAPETKLTSSSRSPLEKLESSAENDLRTVDCEAACAATCGVIVDEIKNKSQDNETVLLCDNVLPVLHSPCNSRIRLTKNKGKEKSLSDGDADVRXSMEETDSHSSVESCNSTGIFSTGKKRRNFEQRLIIGSKRVKKHIEETSGSKPYTKQDSSFINWISNMVKGHSQSIKNDSNILALTLAKPDHDNLRSDEKHTTWKMNQDSEPKNTGFKSIFQSMYCPSLKNVGARMFHHDGEGSEDLEQSNMVQGIDATPITCCAENNSLSKGYLESNKFAASTGRYDAGPSSQPNIKPLNVFNSQESSKNNPVENXNCSFLGLSKDKEEMASHSSSTKQNTNDTENVDSSAPSERKEAENICHRRDNLRSLWITRFSPKSTAPLITSGHLNERYGSQVHSNYXSKLPDSHKNISYLNNCRIEETGQQPANDTEASTGLEEDKGNNKHKSMYKFNSLSSSLGFKNSELMASMFARRFGAIKHIIPTNKADCTSQVNLFCLFCGTRGHQLCDCSAIAERELEDLQKNINSFGGLDESLCLCIKCFQPNHWAISCPNSISTRKHDSEVKTLVDDCIPSGKHFIPCNEGSTRLLTDGADQILSGGTIHDGTDHRADQNINLKRKSNDIITFKIECNASFKKCRGSSSEENRFKEKTITSPYGMAESQISNVPKGICDAVKKLQLSRTDILKWINTQGSISQLDGFFLRLRLGKWEEGLGGTGYHVAYINETERLSSEPNTRKSVSVKAGGIKCMVESQYISNHNFFEEEIMEWWSTTSEAGVEIPSEEDLLAKLQKKKMLGL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00051	66056	71756	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0016570 histone modification

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000051s00003396.1	PF03126.13	Plus-3	940	1039	4.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.632
SRR1783600	control	0.586
SRR1783602	moderate drought stress	1.069
SRR1811619	moderate drought stress	1.068

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.475
DRR006520	Root Summer glycyrrhizin high producing strain	0.471
DRR006521	Root Winter glycyrrhizin high producing strain	7.195
DRR006522	Root Winter glycyrrhizin high producing strain	7.067
DRR006523	Root Summer glycyrrhizin low producing strain	1.258
DRR006524	Root Summer glycyrrhizin low producing strain	1.278
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.753
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.810

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.274
SRR2868004	Drought Stress (root)	13.398
SRR2967015	Control (root)	9.132

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.475
SRR9715740	Leaf	40.999
SRR9715741	Leaf	38.826
SRR9715739	Root	0.141
SRR9715742	Root	1.798
SRR9715743	Root	1.584

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.280
SRR8749028	MeJA induced 9h	14.220
SRR8749029	MeJA induced 9h	8.823
SRR8749030	Uninduced	7.147
SRR8749031	Uninduced	2.528
SRR8749032	Uninduced	4.823

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.641
SRR8400027	Control - Root	6.151