Gene detail information of Glyur000051s00003389 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22600.1 | 2.00E-29 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | AFK46793.1 | 2.85E-94 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LZH5|LTPG2_ARATH | 9.00E-16 | Non-specific lipid transfer protein GPI-anchored 2 (Precursor) |
| trEMBL | tr|I3T2Q1|I3T2Q1_LOTJA | 1.00E-94 | Uncharacterized protein {ECO:0000313|EMBL:AFK46793.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 42877 | 43655 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003389.1 | PF14368.1 | LTP_2 | 11 | 105 | 8.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.142 |
| SRR1783600 | control | 11.096 |
| SRR1783602 | moderate drought stress | 18.152 |
| SRR1811619 | moderate drought stress | 18.507 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.150 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.594 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.445 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.974 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.898 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 135.740 |
| SRR2868004 | Drought Stress (root) | 71.825 |
| SRR2967015 | Control (root) | 90.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.788 |
| SRR9715740 | Leaf | 1.938 |
| SRR9715741 | Leaf | 1.617 |
| SRR9715739 | Root | 11.749 |
| SRR9715742 | Root | 11.822 |
| SRR9715743 | Root | 8.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.303 |
| SRR8749029 | MeJA induced 9h | 0.220 |
| SRR8749030 | Uninduced | 6.352 |
| SRR8749031 | Uninduced | 15.111 |
| SRR8749032 | Uninduced | 3.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 102.686 |
| SRR8400027 | Control - Root | 83.597 |