Gene detail

Gene detail information of Glyur000050s00005742

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G07740.1	actin binding
NR	KEH31966.1	actin-binding FH2 (formin-like) protein [Medicago truncatula]
Swissprot	tr\|Q9FLQ7\|FH20_ARATH	Formin-like protein 20
trEMBL	tr\|A0A072URI8\|A0A072URI8_MEDTR	Formin-like protein {ECO:0000256\|RuleBase:RU361260}

Sequence

Transcript Sequence

>Glyur000050s00005742.1
GTTTCAGACATACACAGAGAGAGAAAGAGAGGGATAGAGAGAGACAGAGACAGGGTCCAACTTCTCCTTTTCAGTCCACCACGCTTCCTTCTTCCCTTCCCCCTCTCTACCTCCATTCCTATTCTCTTCCTTTTCATTCGAATCATACTTCCACATTTCCCCCCCTAAATTCACCTCTCTTTTTAATTTTCCCAACAACAAAAAGCTTTTTCTTCATTAGATCAACAAATTGCTGCTTCTTCGTGGACACCCCCTTTTGCTTTTGCTGCTCTTCTCCCTCTGAATTGAGCATTTCTGGGTTCTATTGGGCTTTGATCGAATTGGGTATTTGTAAGATCTGTGGCGCCATTTGTTTGTGGAAAAAAGTTTTGATCTTTGTGGTGGACCAACCCGAATTACCGGTTTGGATCCGATCGGGGTAGAAACAGCGCCATCAGATGGCGCTGTTCAGAAGGTTCTTCTACCGGAAGCCGCCGGATCGGCTTCTGGAGATCTCCGAGAGAGTTTATGTTTTTGATTGTTGCTTCTCCACGGATGTCTTGGAAGAAGATGAATACAGAGTTTATATGGGGGGAGTTGTGGCTCAGCTACAGGACCACTTTCCAGATGCTTCTTTCATGGTGTTCAACTTCAGAGAAGGGGAGAAACGCAGCCAATTCTCAGACATATTTTCTCAGTATGACATGACAGTTATGGAGTACCCTCGGCAATACGAGGGTTGCCCCCTTCTGCCTTTAGAGATGGTCCATCATTTTCTTCGATCAAGTGAAAGCTGGTTGTCTTTGGAGGGGCAACAGAATGTGCTTTTAATGCACTGCGAAAGGGGAGGTTGGCCCGTGCTGGCATTCATGCTAGCAGGTCTTCTGTTATACCGGAAACAGTACAATGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCCAGAGAACTACTCCACCTTTTATCTCCTTTGAATCCACAGCCTTCTCAGTTCAGATATCTTCAGTATATTTCCAGGAGACATCTGGGTTCTGAATGGCCACCATCAGAAACACCATTATATCTGGATTGTCTGATTCTTAGAGTCCTTCCATTATTTGATGATGGAGAAGGTTGCAGGCCTGTTCTACGTGTCTATGGTCCAGACCCTTCGAAACCTGCCAATAGAAGTTCAAAGCTTCTTTTTTCAACTTCAGAATCCAAAAAGCATGTTCGCCACTACCAACAGGCAGAGTGTATGCTCGTGAAAATTGATATCCATTGTCGTGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAATGAAGATTTTATTCACGAGGAGATGATGTTCAGAGTTATGTTCCATACTGCATTTGTGCGGTCAAATATATTGATGCTGAGCCGTGATGAAATTGATATTTTGTGGGATGCAAAGGATCAATTTCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATGTAAACACAGTCACGGAGAGTGAAGGTGCAAATGAGACTGAAAGTGCTGAGACAGAAAGTGCTTCACCTGAGGAATTCTATGAAGTGGAAGAGATTTTCAGCAATGTAATTGATGCACAGGAAGTTAAGTCGGAGGATGATTCTCATGCTTTACATGACAATGCAGTGGATGATGAAAATAATAAAGAGGTCTGGAAGGAAGAGTTGGATCCTCATGCTTTTCAGGATTGTACGCCAGATGATGGGATTCACAAACAGGTTGGCAAGATGGATTCTGGTATTAATACTGTGAAAGACATCTCTGTCGATGATGTTAACTACAAGTTCAGTAAGAGCATGGATTCAGATCCTCAGGCAGTGAAGGACATTACCGTGGATGATGGAGAAATTAAGTCAACTTCCAGTGTCGTCGCTTCTGATATGATGAAACTTCTGGAAACAAAGGAAGTCACCGTGGATGTGCACCAGGAATTGGCAGTTATGCAGAACAAATGTGATGAAGATAATGAAGCAACAGAAAAGGATTTAGACTCCAAGGAAGGGCAGCAGGTGTCTGATATTTCCAATCAAAAACCTGGTAAACTACTTCCATCTACTGCGAAAAAACAACTTCCATCAAACTCAAAAGAGTCAAAACCAGCCGGAGATACATTTGTCGCAAAACAAAAGGTTAAACAGCAAGAAACCCATGGTTTTCAGGCAAAACAAGCTAAGCCAAGTGCGGTAACTAGGTGGATTCCTTCTAACAAGGGTTCTTACACAAATTCAATGCATGTCTATTATCCACCATCAAGGTATAATAGTGCACCAGCTGCACTGTCGAATTTGAACTCTCCAAAGGAGAAATTGGAAGATGCCAAAGCAAGATCTTTATCTGCTCCTGTTGTCTCTGCAGCAGTTGTTTCTGTTGACACAAAAAATGACCTGAAAAGTCATAATCTGGCCACTTCAAAATCTTCTGGCCACATAGTAGCAGAAATAGATGCAAAATGTCCACCATCACCACTGCCGTCAATTAAAGAGACATCTCTTAAGTCAGCCACTCAACCACAACAACAGACCTCAGAGCAAGTGTTACAGCCACCCCCACCGCCTCATGCTAGAGACTCTTCTTCACATGCTTTTGAATCCATATCACTACAGGATGATGTATCACCTCAAGGCCCTCCATCACCACTAGTAACACCATCTTCTTCTTTGGGTGAAAATGGGTCTACTTCATTGCTGCCGCCTCCACCTCCGCCACCTCCACCACCACCAACTCTAACATCATTTACTACACAAAAAATAAGGGTGAATTTACAACCAGCAACTTCTCCCCCTCCCCCTCCGCCTCCGCCTCCACCTCCACCTCCACCTCCACCTCCACCCCCTTGGAAGTCTATGAGTTCATCAATAGCTGGAGAGACTAGCAGTTCGTTACCACTTCCCCCACCCCATCTTCCTTTTGCAAGCAGTGAAGTTATATCAAAATTTTCTGAAATGCCTACCACAGTGGCCCCTTCAAGGCCTCCTCCTCCTCCTCCACCACCACCACCAATTCCCCCTCCAAGGTACAATGTTTCGTCCATTCCTCCTCCTCCACCACTACCATCAACAACACATCATATAAAGCATGAAATTTCATCCATTCCTCCTCCTCCTCCTCCTCCATTTCCTATGTCTTCGGCACATAGGGCTCCACCCCCACCCCCACCTCCACCTCCACCTCCACCTCCACCTTCCTTAGCTAATTCACATATGGGCTCACCGACACCACCCCAACCTCCACCTCCACCTCCACCTCCTTCTCCTTTTACTAGTGCTCCGCCAGCGCCACCTCCACCTCCCATTAGTAGAGCTCCACTGCCTCCTCCCCCACCTCCTTTTAGTAAAGTTCCGCCTCCTCCATTGCATGGAGCTCCACCACCCCCACCTCCACCTCTTCCTCCTTCAGGTGGATCCCCACCTCCTCCAATGTTTAGAGCCCCACCACCTCCACCACCTCCTCTAATGCATAGAGCACCACCACCACCTCCTCCTCCTCCCATGCATGGAGCACCACCTCCTCCTCCTCCTCTACCTGGTGGTCAAGGACCACCTCCTCCACCTCCTCCTCCCATGCATGGAGCACCACCTCCTCCTCCTCCTCCACCTGGTGGTCGAGGACCACCTCCTCCACCACCTCCTCCCATGCATGGAGGCCCACCTCCTCCACCTCCTCCTGGTGGTAGAGGCCCACCTCCTCTCGGTGGTAGAGGTCCACCTCCTCCACCTTTCCCCGGTGCTCCTCCTCCTCCTCCTAGACCTCCTGGTGGTGCACCTCCACCACCTCCGCCCTTAGGTTCCAAAGGTGCAAATGTTGGCGCACCTCCTGGTGGGAGAGGGCGTGGATATGCACGCCCTGCAGGAGCTAGTGCAATGGCACCTCGACGTTCCTCCTTGAAGCCTNTGCATTGGAGTAAGGTTACAAGGGCACTGCAAGGAAGTTTATGGGAAGAATTACAAAAACACGGAGAACCTCAAATTGCACCAGAGTTTGATGTTTCAGAGCTAGAGAAGCTTTTCTCTGCAAATGTTCCAAAACCGGCTGATTCAGGTGGCAAATCTGGAGGGAGACGCAAGTCTGTTGGATCTAAAACCGACAAAGTCCACTTGATTGACCTAAGGCGGGCTAATAATACTGAAATTATGCTCACTAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGATTCGGTATTAGATGTTGATCAGGTGGAAAATCTCATTAAGTTTTGTCCTACCAAGGAGGAGATGGAACTTTTGAAGGGATACACTGGTGACAAGGAGAATTTGGGGAAGTGTGAGCAGTATTTTTTGGAGCTGATGAAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTCTCTTTCAAAATTCAGTTTCGGTCTCAGGTTACAGAATTTAAGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAAGAGGTCCGAAAATCTGTCAAACTGAAGGAGATCATGAAGAAAATTCTTTATTTGGGTAATACATTAAATCAGGGGACAGCAAGGGGATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTACTAACAATAAGATGACACTGATGCATTATCTTTGCAAGGTCCTAGCTGAAAAGTCGCCTGGACTCCTTGATTTTCACCTAGACCTTATTAGCTTGGAAGGTGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCACCAAGGGATTAGAAAAGGTTAGACAAGAGCTTGCTGCATCTGAAAATGATGGACCTGTGTCTGAAGTTTTCCGTAAGACATTGAAAGAATTCATAACTGTAGCCGAGTCAGAGGTGGTATCTCTAACAAACCTATATTCTGTGGTGGGTAGAAATGCAGATGCACTTGCACAATATTTTGGTGAGGATCCTGCTCGATTCCCGTTTGAGCAAGTTACTGCAACTCTATTAAATTTTATAAGGTTGTTCCGGAAAGCACATGAAGAGAATTGCAAACAAGCAGAGTTAGAGAAGAAGAAAGCTGTGAAAGAAGCTGAAATGGAAAAGGCTAAGGGCATTAACTTGACAAAGAAGAGTGCAAAAGATAGTTGACAACTGGGTTTTCTGCTCCTTTGCATCAAGCGTGTGCTCTTACCGAAAGAGAAGGATTCTACCCGTGTAAAGGGAATGCTTCTGAGACCAGTTACGAAGCTTCCCTTTCCATGATGATGTGAGAATTGGCCTTTCAAGCCGAACTATTGAAGGTGGAATAGCAAATTCCTTCCACATGTGGACCTTTGAACATACAACAGGCTTAGAAGTTAATTCTTTGAAGGCATGCTGTTGATTCAGATTTTTATGGCCAATTGACCCTTTTTGTCAGAATACTCGGGGGAAGTCCAGATTTAGATGCAGAATGGATGCGTACCGTGATTGCTCGAGATGCCATCTGCATCCTCCAGTGAGTGCTATGAAAATTATGGATGCATTCCATTTCATGATGATTCAAGAAGAATTTTTTTGTAGTAGAGCATGTCTTTCCACTGCAGTAGAACTGGCATTGGCTTGCATCATTCGATTTGGCATGGCACCAGAGCAGATGCTTTCTGGACCCCCAAAGTCCAACTGTAGCACCATGAAACCTTTGTACAAAGCACTAACCCTCTCCTTTAGGATCCAATTCTTTCTCGTGTAACATAGAAATTAGTTTTCTTTTTCATAGAGATTTTGGTAGATAGCATTGAGAGAGAGAAAATGTTGTATAGCTGTTAGGTTAAGAGAGAATAGAAATCAGGTCACTGTATTGTAACTGTAATATAAGTGAAGAGCAGGTCGAATTAGAAATGCAAGTTTCATTAATACAATACATTTCAAGTGTAAAATGTTCTTGTTAGTGGTTACATTCTGTTGTACTAGGAGCTCGTGAAATTTACCCCGCTGTATTGTGTGTACCTCACCAGTTGTATCTTGTGATAAGACATTTTCCTACTGTAATA

Protein Sequence

>Glyur000050s00005742.1
MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYRVYMGGVVAQLQDHFPDASFMVFNFREGEKRSQFSDIFSQYDMTVMEYPRQYEGCPLLPLEMVHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQKTLEMVYKQAPRELLHLLSPLNPQPSQFRYLQYISRRHLGSEWPPSETPLYLDCLILRVLPLFDDGEGCRPVLRVYGPDPSKPANRSSKLLFSTSESKKHVRHYQQAECMLVKIDIHCRVQGDVVLECIHLNEDFIHEEMMFRVMFHTAFVRSNILMLSRDEIDILWDAKDQFPKDFKAEVLFLDADAVIPDVNTVTESEGANETESAETESASPEEFYEVEEIFSNVIDAQEVKSEDDSHALHDNAVDDENNKEVWKEELDPHAFQDCTPDDGIHKQVGKMDSGINTVKDISVDDVNYKFSKSMDSDPQAVKDITVDDGEIKSTSSVVASDMMKLLETKEVTVDVHQELAVMQNKCDEDNEATEKDLDSKEGQQVSDISNQKPGKLLPSTAKKQLPSNSKESKPAGDTFVAKQKVKQQETHGFQAKQAKPSAVTRWIPSNKGSYTNSMHVYYPPSRYNSAPAALSNLNSPKEKLEDAKARSLSAPVVSAAVVSVDTKNDLKSHNLATSKSSGHIVAEIDAKCPPSPLPSIKETSLKSATQPQQQTSEQVLQPPPPPHARDSSSHAFESISLQDDVSPQGPPSPLVTPSSSLGENGSTSLLPPPPPPPPPPPTLTSFTTQKIRVNLQPATSPPPPPPPPPPPPPPPPPPPWKSMSSSIAGETSSSLPLPPPHLPFASSEVISKFSEMPTTVAPSRPPPPPPPPPPIPPPRYNVSSIPPPPPLPSTTHHIKHEISSIPPPPPPPFPMSSAHRAPPPPPPPPPPPPPPSLANSHMGSPTPPQPPPPPPPPSPFTSAPPAPPPPPISRAPLPPPPPPFSKVPPPPLHGAPPPPPPPLPPSGGSPPPPMFRAPPPPPPPLMHRAPPPPPPPPMHGAPPPPPPLPGGQGPPPPPPPPMHGAPPPPPPPPGGRGPPPPPPPPMHGGPPPPPPPGGRGPPPLGGRGPPPPPFPGAPPPPPRPPGGAPPPPPPLGSKGANVGAPPGGRGRGYARPAGASAMAPRRSSLKPXHWSKVTRALQGSLWEELQKHGEPQIAPEFDVSELEKLFSANVPKPADSGGKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFRSQVTEFKKSLNTVNSACEEVRKSVKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRATNNKMTLMHYLCKVLAEKSPGLLDFHLDLISLEGATKIQLKSLAEEMQAITKGLEKVRQELAASENDGPVSEVFRKTLKEFITVAESEVVSLTNLYSVVGRNADALAQYFGEDPARFPFEQVTATLLNFIRLFRKAHEENCKQAELEKKKAVKEAEMEKAKGINLTKKSAKDS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	463971	474482	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045010 actin nucleation

cellular_component
GO:0005884 actin filament

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005742.1	PF10409.4	PTEN_C2	200	336	3.20E-28
Glyur000050s00005742.1	PF02181.18	FH2	1150	1518	9.50E-111
Glyur000050s00005742.2	PF10409.4	PTEN_C2	200	336	3.10E-28
Glyur000050s00005742.2	PF02181.18	FH2	1150	1508	2.20E-104
Glyur000050s00005742.3	PF10409.4	PTEN_C2	200	336	3.20E-28
Glyur000050s00005742.3	PF02181.18	FH2	1150	1518	9.50E-111

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.646
SRR1783600	control	17.898
SRR1783602	moderate drought stress	16.439
SRR1811619	moderate drought stress	15.808

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.523
DRR006520	Root Summer glycyrrhizin high producing strain	12.309
DRR006521	Root Winter glycyrrhizin high producing strain	8.361
DRR006522	Root Winter glycyrrhizin high producing strain	8.397
DRR006523	Root Summer glycyrrhizin low producing strain	11.485
DRR006524	Root Summer glycyrrhizin low producing strain	11.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.579
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.435

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.607
SRR2868004	Drought Stress (root)	37.410
SRR2967015	Control (root)	36.432

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.010
SRR9715740	Leaf	6.340
SRR9715741	Leaf	5.977
SRR9715739	Root	3.032
SRR9715742	Root	14.940
SRR9715743	Root	13.593

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.289
SRR8749028	MeJA induced 9h	17.518
SRR8749029	MeJA induced 9h	8.802
SRR8749030	Uninduced	17.779
SRR8749031	Uninduced	16.578
SRR8749032	Uninduced	10.479

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.633
SRR8400027	Control - Root	27.765