Gene detail

Gene detail information of Glyur000050s00005739

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18680.1	2.00E-65	HNH endonuclease domain-containing protein
NR	KEH31972.1	7.08E-105	HNH endonuclease domain protein [Medicago truncatula]
trEMBL	tr\|A0A072UQM8\|A0A072UQM8_MEDTR	3.00E-105	HNH endonuclease domain protein {ECO:0000313\|EMBL:KEH31972.1}

Sequence

Transcript Sequence

>Glyur000050s00005739.1
CTAGCTGTTCGCTGATCATTTCAGGGATGAGTTCCTCGCCGCACCGTTATCGCGGTGACGGCAACGGCGACAGCAGACCGAGATTTTTCGACGCAAAGACGAAGAGTATCTGCTGGGCGAAGGCTGATACTGTTCCCGGCCGTCACCCAGAAAGGTGGCGCAAGGACGCTGCCGGTAACATTGTCTGCAAGCGTTTCTTCAACTGTCTCGGCTGCCTCTGCTACGAGTACGATCACATCATCCCTTTCTCCAAAGGCGGTGAATCCACGGCAGATAATTGCCAAATACTTCAATCAAGAGTGAACAGATTCAAATCAGACAAATATCAGATTGATTCGGATAAGTTGAGAGGCTACTCTTGTGATATTAATTTTACTGATAAGGAGCTTGATATAATTGAGATGGCTGTTTATGGTGATGTAATCCGGCCAGGAAACCAGTGTCGTTGCAGAACTGTTGATGAAATGCTTGGCAAATTCAAGTCGAAAGACAAGACAGATGCATGCAAGTTGCCATAGGAGGACGAATCTTAGCTATAACAAACAATTTTTCAAGACGTGTATTATAAAAGGAAGCTCTGTACCGCACAATCTTGTTCCTTTTTAGACAATACATTACGATTGCTTCACCTTCTATCATGATAATGACCTATAGGAATGGATTCACAAGTTTTTGGATGTTGTGGTGATAGAACTGAATTGGTGATTCACTAGATGTATAATTCATGATTGAACTGAGTCTGCAACCAATACGGTCAGACCGAATAGTATGAGTGTAAACATGTATTGACGATTTGTTTTCTTCACTTAATCATGTTATCTTTTGTGAAAAGTGAGATTTTGGAATTCTAGACCAACAAATGAAAAAAAGTATAGAAATTTGGCGATTGTGGCATCGTGCAAAAATGGGCTCATTGCTTACTAGTACGTTCCTTCCCTTGATAAAGAAGTTACTAAAAGAACAGTAAAAAATGGTGAGTAGACTATTCAAGCCAGTCACGACAGACCAAATATGTATACTACTGGATGAGACTTGTGATCAGTAGATAACGATTAGAAAAGGCAATAGGGAGGAAATTAAATTTTCATCTATTAGAATTGACCAAAAATAGAGAATCCGTGGTAATTTTTTTTTCTTTTCTTCTCCGTGGCCTTCTGAGTTCAATAAATTGAAAACTGAGAGGACTACACTCCTCAAATTGTTGTGCTTCCAAGCTTCTAGGTAACAATTCTTGCTGCTGGATAAACTGTACATCCTGATGCTCATTTGTTGCTCTCAGTCACAGCATTGAGGTTNGGGTAATGGAGATGGCCCTCTCACAAGGACATTTTGATCCCCATATTCAAGGATCTATATCCTTCCATAGTTGCATGCATGAGTAAATATCACATTTGCAGTTACTTCCCATGCTTCTTACCTGCAATCCAGGGATCACACATTAAAGAATGAAGAGAAATGATGCCATGCTAACATTCTCAACCGATTATAGGCACAAAAATGAGGGAGGAATTAAGGATAGAATAGAAAGTAACAAAACCATCTGCTTGTTCTTATAGTAACAATCTTCTTGATATTACTGTCGTTTACCTCTCTGAAACCATGATCTCCGGACTGTGCGCCACATGTGGCGCTCATGTCTTTCTAAGAGCTCGTCAACTGTGTGCATTTGAGATAGTAGGGGCCCTGAAAACTCAACCTTCTCTCCTTGATCCTGATAATAAGGAAAACAAATAAGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	443106	446351	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004519 endonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005739.1	PF01844.18	HNH	62	99	5.60E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.465
SRR1783600	control	20.098
SRR1783602	moderate drought stress	23.987
SRR1811619	moderate drought stress	19.235

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.902
DRR006520	Root Summer glycyrrhizin high producing strain	37.209
DRR006521	Root Winter glycyrrhizin high producing strain	10.647
DRR006522	Root Winter glycyrrhizin high producing strain	10.802
DRR006523	Root Summer glycyrrhizin low producing strain	35.696
DRR006524	Root Summer glycyrrhizin low producing strain	35.452
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.306
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.915

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.316
SRR2868004	Drought Stress (root)	24.234
SRR2967015	Control (root)	28.351

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.851
SRR9715740	Leaf	9.873
SRR9715741	Leaf	6.585
SRR9715739	Root	15.121
SRR9715742	Root	7.790
SRR9715743	Root	8.417

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.747
SRR8749028	MeJA induced 9h	15.742
SRR8749029	MeJA induced 9h	14.296
SRR8749030	Uninduced	11.621
SRR8749031	Uninduced	8.479
SRR8749032	Uninduced	14.610

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.202
SRR8400027	Control - Root	17.609