Gene detail information of Glyur000050s00005726.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07830.1 | 4.00E-179 | glucuronidase 2 |
| NR | XP_003549557.1 | 0 | PREDICTED: heparanase-like protein 1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FF10|HPSE1_ARATH | 0 | Heparanase-like protein 1 (Precursor) |
| trEMBL | tr|K7MKF8|K7MKF8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G08444.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00050 | 358480 | 361591 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH79 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K07964 | HPSE | EC:3.2.1.166 | Glycosaminoglycan degradation | map00531 |
| Proteoglycans in cancer | map05205 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000050s00005726.1 | PF03662.9 | Glyco_hydro_79n | 26 | 344 | 3.90E-155 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.778 |
| SRR1783600 | control | 3.721 |
| SRR1783602 | moderate drought stress | 4.710 |
| SRR1811619 | moderate drought stress | 4.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.732 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.662 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.567 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.319 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.610 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.575 |
| SRR2868004 | Drought Stress (root) | 5.579 |
| SRR2967015 | Control (root) | 4.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.435 |
| SRR9715740 | Leaf | 3.659 |
| SRR9715741 | Leaf | 2.339 |
| SRR9715739 | Root | 1.728 |
| SRR9715742 | Root | 3.695 |
| SRR9715743 | Root | 3.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.045 |
| SRR8749028 | MeJA induced 9h | 0.084 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.120 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.556 |
| SRR8400027 | Control - Root | 11.292 |