Gene detail

Gene detail information of Glyur000050s00005725

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61210.1	8.00E-78	soluble N-ethylmaleimide-sensitive factor adaptor protein 33
NR	AFK41395.1	2.94E-168	unknown [Lotus japonicus]
Swissprot	tr\|Q9S7P9\|SNP33_ARATH	2.00E-110	SNAP25 homologous protein SNAP33
trEMBL	tr\|I3SMA3\|I3SMA3_LOTJA	1.00E-168	Uncharacterized protein {ECO:0000313\|EMBL:AFK41395.1}

Sequence

Transcript Sequence

>Glyur000050s00005725.1
CAAACACAACACAGAACCAAACGAAACCCCCCAAAAAACACGTTCTCTCGCTCTGAATTTTTTTTGCCTTTGCAAACTGCGATTTCTCTGCAGTTTCCACCCCTCTGAATCTGACCTTTCTTGACGCGATTTTGCACAAGTCTCCTCTCCTGCATTACCAACTTCTCATTCAAAACCCTCCCCTCTTCTCTTCTCCCACAATTCGTTATCCAATCTAGACCAGAGCCTTTTAATATTGCTGGTTCTTCACGAGCCTTTCTGCACTTCACCTTCGGTTTTCGCCTTCCTCCAGGGAGAAAACACAGGATTGTTATTGTTTCTTATTTGTTGAGCAGTTTACCTTAATCTGCCTCTGACTCAATTCTGCAACAAGAGAGGGAGAATGTTTAGTTCAAAGAAATCTCCTTTGAAAGTTGCTAAACCTAACTCTGTTGATCCTGTCTATGCTGTTAATAAATCCGGGTCGAACCCATTTGATTCTGATGATGAGGCAAGGGATAACAATAACAAAAAGTATAGTTCCTCGAGGAAGGCTTCTTCAGAACGTGCACTAGTTACACTAGAAGTTAACACCAACCCTTTTGATGACCTTGATGACAATAAGAACTCTTCATCATCTTCATATGCCCCTCAATCAGCAGACCGGTACAGGTATAAGAATGATTTTCGTGACTCTGGCGGNTTAGAGAATCAATCGGTGCAAGAACTTGAGAGTTACGCTGTTTACAAGGCTGATGAAACCACAAAATCGGTCCACAGTTGCTTGAAGATAGCAGAGAATATAAGAGAGGATGCTACCAAGACTTTAGTCACCCTTCATCAACAGGGTGAGCAAATTACCAGGAGTCANTATGTAGCTGCTGACATTGATCACGATTTAAGTCGGGGAGAAAAGCTTTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCGAAGAAGACACGTTCAATAACAGGCCCTGTTATTTTTGGAGATGATCCGGTCAGAAGAAAGGGCAACCACATGGAACAGAGAGAGAAGTTGGGATTGACTTCTGCACCCAAAGGGCAGTCCAAGTTGCGGACTCCGCCTCATGAACCAACAACCGCGCTTCAAAAAGTCGAGCTTAAAGAGATGGCTGTTGACATGGGATCCGAAATTGAGAGGCATAACAAAGCTTTGAATCCTCTACACGATGATGTGGATGAGTTGAATTTCCGAATGAAAGGCGCTAATCAACGTGGCCGTCGTTTACTCGGAAAATGATATTGATTTTTCATCTTTTCATCATTGTTTTCTGATACTGTAATGGATCCATCATCTGTGTTAACACAATATTTTTCATGGTNACG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	355044	357846	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005725.1	PF05739.14	SNARE	243	286	1.40E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.312
SRR1783600	control	13.256
SRR1783602	moderate drought stress	11.377
SRR1811619	moderate drought stress	11.234

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	63.548
DRR006520	Root Summer glycyrrhizin high producing strain	62.700
DRR006521	Root Winter glycyrrhizin high producing strain	9.128
DRR006522	Root Winter glycyrrhizin high producing strain	8.798
DRR006523	Root Summer glycyrrhizin low producing strain	129.329
DRR006524	Root Summer glycyrrhizin low producing strain	129.624
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.695
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.308

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.328
SRR2868004	Drought Stress (root)	97.625
SRR2967015	Control (root)	73.083

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	128.681
SRR9715740	Leaf	95.408
SRR9715741	Leaf	180.747
SRR9715739	Root	48.356
SRR9715742	Root	89.770
SRR9715743	Root	76.795

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	73.930
SRR8749028	MeJA induced 9h	72.823
SRR8749029	MeJA induced 9h	112.716
SRR8749030	Uninduced	343.406
SRR8749031	Uninduced	149.913
SRR8749032	Uninduced	135.073

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.933
SRR8400027	Control - Root	61.431