Gene detail information of Glyur000050s00005723.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26610.1 | 4.00E-27 | C2H2-like zinc finger protein |
| NR | XP_007155253.1 | 0 | hypothetical protein PHAVU_003G186100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SHD0|ZAT4_ARATH | 8.00E-25 | Zinc finger protein ZAT4 |
| trEMBL | tr|V7CAP0|V7CAP0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27247.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00050 | 340262 | 341983 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000050s00005723.1 | PF13912.1 | zf-C2H2_6 | 9 | 31 | 4.50E-05 |
| Glyur000050s00005723.1 | PF13912.1 | zf-C2H2_6 | 98 | 119 | 0.00031 |
| Glyur000050s00005723.1 | PF13912.1 | zf-C2H2_6 | 396 | 420 | 6.10E-08 |
| Glyur000050s00005723.1 | PF13912.1 | zf-C2H2_6 | 480 | 503 | 2.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.899 |
| SRR1783600 | control | 1.933 |
| SRR1783602 | moderate drought stress | 1.237 |
| SRR1811619 | moderate drought stress | 1.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.827 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.842 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.453 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.424 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.112 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.154 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.432 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.374 |
| SRR2868004 | Drought Stress (root) | 7.170 |
| SRR2967015 | Control (root) | 6.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.660 |
| SRR9715740 | Leaf | 0.478 |
| SRR9715741 | Leaf | 0.689 |
| SRR9715739 | Root | 1.562 |
| SRR9715742 | Root | 2.199 |
| SRR9715743 | Root | 3.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.288 |
| SRR8749028 | MeJA induced 9h | 0.430 |
| SRR8749029 | MeJA induced 9h | 0.217 |
| SRR8749030 | Uninduced | 0.060 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.941 |
| SRR8400027 | Control - Root | 5.622 |