Gene detail

Gene detail information of Glyur000050s00005721

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G29360.2	UDP-glucose 6-dehydrogenase family protein
NR	XP_007155252.1	hypothetical protein PHAVU_003G186000g [Phaseolus vulgaris]
COG	YP_003548756.1	nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221]
Swissprot	tr\|Q96558\|UGDH1_SOYBN	UDP-glucose 6-dehydrogenase 1
trEMBL	tr\|V7CED6\|V7CED6_PHAVU	UDP-glucose 6-dehydrogenase {ECO:0000256\|PIRNR:PIRNR000124}

Sequence

Transcript Sequence

>Glyur000050s00005721.1
TGAATCATTAATTAATCCAGAAGCAAAGTTCGAAACGTATGCCTGCCATCCATCCCAGATGCACCCCCTGCTCTTCGCAGATGCCATGGGGGAAAATGGTACTAAAGATCTGTGGAATTGGAGCTGGGTATGTAGGGGGTCCTACAATGGCTGTTATAGCCCTCAAATGTCCCTCAATCGAAGTGGNTGTGGTTGACATATCTCACTCCCGCATATCAGCTTGGAATAGCAACAAACTCCCTATCTATGAGCCTGGCCTAGAAGAAGTGGTGAAGCAGTGTATAGGAAAGAACCTCCTCTTTAGCACTGATGTGGAGAAGCATGTGTGTGAGGCTGACATAATCTTTGTTTCAGTGAACACCCCAACAAAAACAAGAGGGCTTGGAGCTGGCAAAGCTGCAGACTTGACCTATTGGGAGAGTGCAGCTAGGATGATTGCTGATGTGTCCAAATCAGACAAGATTGTTGTTGAGAAATCCACTGTCCCAGTTAGAACAGCTGAGGCAATTGAGAAGATTCTGACCCACAACAGCAAGGGAATCAAGTATCAGATTTTGTCAAATCCTGAGTTTCTCTCTGAGGGGACTGCCATTCAGGACCTTCTATATCCTGATAGGGTTCTGATTGGAGGGAGTGAAGGTCCTGAAGGTCAAGTTGCAATTCAAAAATTGAAGGATGTATATTCACATTGGGTTCCTGAGGACAAAATCATAACAACCAATCTTTGGTCATCAGAACTGTCCAAGTTAGCTGACAATGCCTTCTTGGCACAAAGGATTTCATCTGTGAATGCCATGTCAGCTCTATGTGAGGCCACTGGGGCTGATGTCTCACAGGTTTCTCATGCTCTCAGCAAAAACACCAAAATTGGGCCAAAATTCCTAAATGCAAGTGTTGGTTTTGGTGGTTCTTGTTTTCAAAAGGACATACTCAACTTGGTCTACATATGTGAGTGTAATGGCCTCACTGAAGTGGCAAACTACTGGAAAGGGGTAATTAAGGTGAATGACTATCAAAAGAGTAGGTTTGTTAACAGGGTGGTGACCTCCATGTTCAATACAGTTTCGGGTAAGAAGATTGCAGTTCTTGGGTTTGCCTTCAAGAAAGACACAAGTGACACTAGGAAAACTCCTGCTATTGATGTTTGCAAAGGTCTTTTGGGAGATAAAGCTTGCTTGAGCATTTATGATCCAAGGGTTACCGAGGACCAGATTCTAAAGGATTTGTCAATGAATGATGCTCAATGGGACCATCCAATCCACTTGCAGCCAGTGAGATTAAGCACTAGTGTGGAACAGGTTAATGTTGTTGGGGATGCTTATGNGGCAACTAAAGATGCTCATGGGATTTGCATTCTTACAGAATGGGATGAGTTCAAGACACTTGATTATCAAAGAATATTTGACAGTATGCAGAAACCAGCATTTGTTTTTGATGGGAGAAACATTTTGAATCTTGACAAGTTGAGGAAGATTGGATTCATTGTATACTCAATTGGGAAGCCATTAAACCACTGGCTGAAGAACATGCCTCAGCAGGCATGATATGACAAATTACTNCAGGGGAACAAATACTTAAGATTATATGAGCTGAGCAGGACAATCTTATCCTCTNTGGAATTTCAACCCTCTGTTTTTATAATTTTAGCAAGCATGAGCATTAATTGTTGCTATTCTGTTAAAATAAAAATATCACTGATTTGAGGTTATATTGTTGGAGACAATTAAGACCATTATTATTATATGTTTCAATGAGAGAGAATTTTTATATTAATTTAAATACTAAGGGGAAAAAGGTGTAATATCTATCTCATAGTCTCATACAACAACTATACTAGTATTGGATGATTTATCTATCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	323439	326094	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00012	UGDH, ugd	EC:1.1.1.22	Pentose and glucuronate interconversions	map00040
			Ascorbate and aldarate metabolism	map00053
			Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003979 UDP-glucose 6-dehydrogenase activity

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005721.1	PF03721.9	UDPG_MGDP_dh_N	23	205	7.00E-61
Glyur000050s00005721.1	PF00984.14	UDPG_MGDP_dh	229	326	5.60E-30
Glyur000050s00005721.1	PF03720.10	UDPG_MGDP_dh_C	348	472	9.00E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.048
SRR1783600	control	9.175
SRR1783602	moderate drought stress	19.798
SRR1811619	moderate drought stress	19.862

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.697
DRR006520	Root Summer glycyrrhizin high producing strain	16.455
DRR006521	Root Winter glycyrrhizin high producing strain	44.021
DRR006522	Root Winter glycyrrhizin high producing strain	42.742
DRR006523	Root Summer glycyrrhizin low producing strain	37.632
DRR006524	Root Summer glycyrrhizin low producing strain	37.668
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.785
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.941

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.824
SRR2868004	Drought Stress (root)	16.037
SRR2967015	Control (root)	28.981

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.400
SRR9715740	Leaf	15.087
SRR9715741	Leaf	25.547
SRR9715739	Root	8.192
SRR9715742	Root	17.425
SRR9715743	Root	17.456

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.408
SRR8749028	MeJA induced 9h	56.625
SRR8749029	MeJA induced 9h	53.740
SRR8749030	Uninduced	99.139
SRR8749031	Uninduced	102.731
SRR8749032	Uninduced	111.031

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.879
SRR8400027	Control - Root	19.700