Gene detail

Gene detail information of Glyur000050s00005714

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G74310.1	heat shock protein 101
NR	KEH32009.1	ATP-dependent chaperone ClpB [Medicago truncatula]
COG	YP_007132111.1	ATP-dependent chaperone ClpB [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|P42730\|CLPB1_ARATH	Chaperone protein ClpB1
trEMBL	tr\|A0A072UQA8\|A0A072UQA8_MEDTR	ATP-dependent chaperone ClpB {ECO:0000313\|EMBL:KEH32009.1}

Sequence

Transcript Sequence

>Glyur000050s00005714.1
GGAGAAGTCTAGTAGTTTCTCGTGCATTCGGCGTGAAATCTCCAGAATCGTTCAGATGGATCTTCTCCATTTACAAATACACACCCTTCTCCTTCTTCCTCACTGCTTCACTCACTTTCACGCAAACAAATACCCACCGTTTATTCTCGCACCGCCAAAACCAAACTCTACGCAAAGCTGTATATNTATTCTTCTCCCATTCTCATCTGCTTCGTTCGAACAAACAAGGCGTCACATACTCGCTTGCTATCGCGCTCTTATTTTCTATAACACCAAAAGAGCCTTTCATCATTCGGAACTCTCGTAACCAAAGGTTGTAAATGAATCCTGAGAAGTTCACCCACAAGACCAATGAGGCCCTTGCTGGGGCTCATGAACTGGCAACGAGTTCAGGACATGCGCAGTTCACTCCCCTCCACCTTGCTTGCTCTCTGATTTCCGATTCCACTGGCATCTTCTTCCAAGCAATTTCCAATGCTTGCGGTGGCGATGAATCTGCGCGTGCCGTGGAGAGAGTTTTGAACCAGGCATTGAAGAAATTGCCCTCTCAGTCTCCTCCCCCAGATGAAATACCCGCAAGCACTACCCTCGTCAAGGCCATTCGCAGAGCACAGGCTGCACAGAAGTCTCGTGGTGACACCCATTTAGCCGTTGATCAATTGATATTGGGCATTCTCGAGGATTCCCAAATCAATGACTTNCTGAAAGAAGCTGGTGTGGCCACTGGCAAGGTTAAATCAGAGGTTGAAAAGCTTCGTGGGAAGGAAGGGAAGAAGGTTGAGAGTGCCACTGGTGACACAACTTTTCAAGCATTGAAGACTTATGGGAGAGACTTGGTTGAACAAGCAGGGAAGCTTGACCCTGTAATTGGTCGTGATGAAGAGATTAGAAGGGTTGTGAGGATTTTGTCAAGGAGGACGAAGAACAATCCAGTTCTTATAGGAGAGCCAGGTGTTGGTAAAACAGCTGTGGTTGAAGGGTTGGCTCAGAGGATTGTTAGAGGGGATGTTCCTAGCAATCTTGCTGATGTTAGGCTTATTGCTTTGGATATGGGTGCATTGGTTGCTGGTGCAAAGTATAGGGGAGAATTCGAAGAGCGGTTGAAGGCGGTTTTGAAGGAAGTAGAGGAGGCTGAAGGGAAGGTTATTCTCTTCATTGATGAAATCCATTTGGTTCTGGGTGCCGGTCGAACCGAGGGATCNATGGATGCTGCTAACCTGTTCAAACCTATGCTTGCTCGTGGCCAGCTTAGGTGCATTGGTGCCACAACGCTTGAGGAATATAGGAAGTATGTGGAAAAGGATGCTGCCTTTGAAAGGAGGTTCCAACAGGTTTATGTGGCTGAACCTAGTGTTGTTGACACAATCAGCATCCTTCGGGGGCTAAAAGAGCGATATGAAGGTCATCATGGTGTTCGAATTCAGGACCGTGCTCTTGTTGTTGCAGCTCAATTGTCTAGTCGATACATTACTGGGCGTCATCTTCCTGACAAGGCAATTGATTTGGTTGATGAGGCATGTGCAAATGTCAGAGTTCAACTTGATAGTCAACCAGAGGAGATAGACACCCTTGAAAGAAAGAGAATGCAGCTGGAGGTGGAGCTTCATGCTCTTGAGAAAGAGAAGGACAAAGCTAGCAAAGCCCGTCTTGTAGATGTACGGAAAGAACTGGATGACTTAAGAGACAAGCTCCAACCTCTGATGATGAAGTATAGAAAAGAGAAAGAGAGGATTGACGAGATTCGACGGCTCAAACAGAAACGAGAAGAGCTTCTCTTTGCTCTCCAGGAGGCAGAGAGAAGGTATGATCTAGCCAGGGCTGCAGACCTGCGATATGGGGCAATTGAAGAGGTGGAAACTGCAATCCGACAGCTNGAAGGGAACACTGATGAGAAGAACTTAATGTTGACAGAAACTGTTGGACCAGACCAGATAGCTGAGGTTGTGAGCCGCTGGACCGGTATACCAGTGACAAGGCTTGGCCAAAATGAGAAGGAAAGGTTGATTGGTCTTGGGGACAGATTGCACCATAGAGTTGTGGGACAAGACCAAGCAGTTAATGCTGTTGCTGAGGCTGTGTTGAGATCAAGAGCTGGTCTTGGGAGACCTCAACAACCGACTGGCTCATTCCTGTTCTTGGGTCCAACTGGTGTTGGTAAAACCGAGCTTGCAAAGGCTCTTGCAGAACAGCTCTTTGATGATGAAAATCAGCTGGTGAGGATTGACATGTCTGAGTACATGGAGCAGCATTCTGTGTCACGGTTAATTGGTGCACCACCAGGGTATGTTGGACATGAGGAAGGTGGGCAATTAACTGAAGCTGTAAGGAGAAGGCCTTACAGTGTGGTACTCTTTGATGAAGTGGAGAAGGCACATACATCTGTGTTCAATACTCTTCTTCAAGTCTTGGATGATGGGAGGTTAACTGATGGACAAGGCCGAACTGTAGACTTTAGAAACACTGTCATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCCTAAGTGGACTTTCAGGAAAATGTTCCATGAAAGTAGCACGCGATCGAGTAATGCAGGAGGTGAGAAAGCATTTTAGACCAGAATTGTTGAATCGGCTCGATGAAATTGTGGTATTTGATCCTCTCTCACATGACCAATTGAGGAAGGTTGCAAGGTTACAAATGAAGGATGTTGCTAGTCGTCTTGCCGAGAGAGGAATTGCCTTGGCAGTGACAGATGCAGCACTTGACTACATACTTGCTGAGAGCTATGATCCGGTGTATGGTGCTAGACCAATTAGGAGGTGGCTTGAGAGGAAGGTGGTGACAGAGCTGTCTAGGATGCTTGTGAGGGAAGAAATTGATGAGAATTCTACAGTTTACATAGATGCTGGGCCTAAAGGGAATGAGTTGGCATACCGTGTGGAGAAGAATGGAGGGATAGTTAATGCTGTAACTGGGCAGAAGTCAGATATTTTGATTCAGATACCTAATGGACCAACAAAAAGTGATGCTGCTCAGGCTGTCAAGAAAATGAAGATTGAGGAAATTGACGATGATGAAATGGAAGAGTGAACTTTNTGATATAATAACTGTAATTACATTTGCAGATGTACGGAGTGGTTCAAGTTTAAGTGTTTGTTTCTCTTGAACTTTCTTTTTTGTGTCTAGCATTCTGAATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	270160	274218	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0019538 protein metabolic process

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005714.1	PF02861.15	Clp_N	17	60	2.20E-05
Glyur000050s00005714.1	PF02861.15	Clp_N	97	147	9.20E-07
Glyur000050s00005714.1	PF00004.24	AAA	205	318	5.60E-14
Glyur000050s00005714.1	PF07724.9	AAA_2	599	763	3.50E-55
Glyur000050s00005714.1	PF10431.4	ClpB_D2-small	769	849	1.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.473
SRR1783600	control	14.403
SRR1783602	moderate drought stress	25.088
SRR1811619	moderate drought stress	24.954

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	70.437
DRR006520	Root Summer glycyrrhizin high producing strain	69.514
DRR006521	Root Winter glycyrrhizin high producing strain	44.408
DRR006522	Root Winter glycyrrhizin high producing strain	43.150
DRR006523	Root Summer glycyrrhizin low producing strain	45.007
DRR006524	Root Summer glycyrrhizin low producing strain	44.912
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.488
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.528

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.652
SRR2868004	Drought Stress (root)	13.596
SRR2967015	Control (root)	11.471

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.521
SRR9715740	Leaf	9.920
SRR9715741	Leaf	7.908
SRR9715739	Root	3.255
SRR9715742	Root	29.194
SRR9715743	Root	23.452

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.290
SRR8749028	MeJA induced 9h	20.137
SRR8749029	MeJA induced 9h	14.856
SRR8749030	Uninduced	6.199
SRR8749031	Uninduced	4.562
SRR8749032	Uninduced	5.555

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.413
SRR8400027	Control - Root	35.832