Gene detail information of Glyur000050s00005710 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18650.1 | 3.00E-34 | plasmodesmata callose-binding protein 3 |
| NR | XP_003527110.1 | 2.32E-68 | PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 3-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FZ86|PDCB3_ARATH | 2.00E-48 | PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (Precursor) |
| trEMBL | tr|D7SI17|D7SI17_VITVI | 2.00E-68 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI15127.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00050 | 216247 | 230797 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000050s00005710.1 | PF07983.8 | X8 | 22 | 90 | 7.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 277.990 |
| SRR1783600 | control | 279.264 |
| SRR1783602 | moderate drought stress | 178.887 |
| SRR1811619 | moderate drought stress | 179.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 194.589 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 197.014 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.956 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.961 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 77.155 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 76.575 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.696 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 125.185 |
| SRR2868004 | Drought Stress (root) | 43.913 |
| SRR2967015 | Control (root) | 59.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.796 |
| SRR9715740 | Leaf | 0.644 |
| SRR9715741 | Leaf | 4.592 |
| SRR9715739 | Root | 184.884 |
| SRR9715742 | Root | 64.480 |
| SRR9715743 | Root | 83.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 73.816 |
| SRR8749028 | MeJA induced 9h | 13.906 |
| SRR8749029 | MeJA induced 9h | 31.782 |
| SRR8749030 | Uninduced | 0.536 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 2.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 210.398 |
| SRR8400027 | Control - Root | 215.796 |