Gene detail

Gene detail information of Glyur000050s00005709.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61060.1	0	histone deacetylase 5
NR	XP_003524633.1	0	PREDICTED: histone deacetylase 5-like [Glycine max]
COG	YP_004627469.1	3.00E-71	histone deacetylase superfamily [Thermodesulfobacterium geofontis OPF15]
Swissprot	tr\|Q8RX28\|HDA5_ARATH	0	Histone deacetylase 5
trEMBL	tr\|I1JZJ1\|I1JZJ1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G00460.1}

Sequence

Transcript Sequence

>Glyur000050s00005709.1
ATGACACAGCCACCGGTGCCCTCTCCCCCTCCGTCGCCACCTCCGTCGTCAAAGCCCTCCGAAAGCATCTGCGTCCGCGTCCGCTGCGCCGGATGCCGCACGATCCTGACCGTGGCGCCCGGGGTGACCGAGTTCGCCTGCCCTATCTGCCGAATGCCGCAGATGCTTCCCCCCGAGCTNATGGACAGGGCCCACCAAAGGGCACCGCCGCGGCCGCCGTTGCCTCCTCCTCCTGCTCCCNGTACTTCGGAGCAGCACTTGGCCTTACGCGGCATTGATCCCACTAAGATGCAGCTTCCCTGCGCTAGCTGCAAGGCAATCCTCAACGTCCCTCACGGCCTCGAGAGGTTCTCTTGCCCCCAATGTTACGTTGACCTCGCCGTCGATCTCTCCACGGTCAAGCAGCTCTCTCCCCCGCCTCCTCTCGAAGAAGCTAACGAGGTTTGGTTCCCTTCTCCCGATTCCGGAATTGTGAACTCCCTAGCGAAATTGAGTCACTGCCTTCACCTGACGGTGCGGAGGTTGCCGGCGGAACTGGGCCGTGGCGGTGGCGTTTCTGTTCAAATTGGGGGGTGTATTCATTGGGGCATTTTGAAAGTGGGAATGGGAAGGAGGGGTGTATGTGTAAAAACGGGGGTGTATTTAGTAGTGGCTATTTGTATTGTGGATTATATACACTTGTACTTTTGTTTTCAATTGGTTTTCGATGCATGGGATTGGTGGCAGCTGAGACAGAAAGATAGAAGAAGAAAAGTGAAGAGTGTGCGGAGTAGTGAGAAGAGAAGCAAAATGAGTGGTCAACAAGGTCAACGCCGTGTGGGTTTACTATACGACGAGAGGATGTGTAAGCACCACTCAGAAGACGACGATTTCCATCCCGAAACCCCTAATCGCATTAGGGCTATTTGGAACAAGCTCCAAACCTCCCGCATTACCGACCGATGTGTGATTTTGGAGGCTAAAAAAGCTGAAGACAAGCATTTACATTCAGTCCACTCAAAAAATCATGTCAATCTTATTAAGAACATCAGCTCTAAACAATTTGGTTCGCGGAGGCATAAGATTGCGTCTAAATTGAATTCTATATATTTCAATGAAGGTTCATCGGAAGCTGCTTATCTTGCTGCTGGCTCTGCTATAGAGGTTGTTAAAAGAGTGGCAAGCAGGGAATTGCATTCTGCTGTTGCTATTATTAGGCCTCCAGGTCATCATGCAGAAAAAAACGAAGCGATGGGATTTTGTCTGTTTAACAATGTTGCAATTGCCGCATCTTATCTATTAGATGAAAGACCAGAATTCGGTGTGAAGAAAATCTTAATTGTTGATTGGGATGTCCATCATGGAAATGGTACTCAAAAAATGTTCTTGAATGATTCTCGAGTTTTATTCTTCTCCGTTCACAGGCATGAATTTGGGACTTTTTATCCATCTAATGATGATGGCTTTTATACCATGATTGGGGAAGGAAAAGGTGCTGGATACAATATAAATGTGCCATGGGAGAATGCGAGATGCGGTGATGCAGACTACTTTGCAGTGTGGGATCACATCTTGCTCCCTGTTGCCAAAGAATTTAATCCAGACATGATTATAGTTTCTGCCGGGTTTGATGCAGCTGTTGGTGACCCTCTGGGAGGATGTCGTGTCACACCATATGGTTATTCTGTTCTGTTGAAAAAGTTGATGAATTTCGCTGAAGGTAGGATTGCACTGGTTTTAGAAGGAGGATATAATCTTGACTCCATTGCAAAATCAATGCATGCTTGTTTGGAAGTTTTGCTAGAAGACAAGTCTCTTAGTGGATCCTCAGAGGCCTATCCATTTGAGTCTACTTGGCGTGTAATTCAAGCGGTGCGCAAGGAGTTAAGTCCCTTTTGGCCCATACTTGCCTGTGAAGTACCACCAGAATTAATTAGTCAAATGGCACCACCTCCGCATACTCTTATCTCAAGCTCTGACTCCGAGACCGAGGATGACAAGGGTCCACTCAATTCAGAAAATCTTGCAGAGCTTCTTCAGGATGTCATAAAACCACTTTCCAAACTGAAAGTCAATGCAGATGAAGAAACTGATGCCTCTAGTTCTTGGAGATCAGAATTGTCAAATGTTTACGTATGGTATGCCTCGTATGGATCAAATATGTGGAAACCAAGATTTGATTGCTACATAGCAGGTGGGCAGGTGGAAGGTATGCAGAAGCCCTGTTCTGGTTCAGTGAACAAAACTCTTCCAGAGGAAACCACGTGGAAAACTTTCCCTTGCCATATATTTTTTGGCCGCGATTCCTCGAGTTCATGGGGTCCTGGAGGGGTTGCGTTTCTTAATCCTGAGAAAAACTTTCAGCACAAGGCCTACATGTGCCTGCACAAAATTTCGCTAGAGCAGTTCAATGATATTTTATTTCAGGAAAATGGTTTAANCCTTAATGCGGGCTCTTCTGTATTTGATATAACTACTCTGAATGCCATCTCTAACAAGGACTTCAGTTCTCATGAGGTTGTTGAGGGTGGTTGGTATGGTAATGCTGTCTACTTAGGAAAGGAGCAGGATGTTCCAATAATTACCATGACGTGTTCGCTTCTTGATATTGAGCACTTCAAATCTGGGAAGCTACCATTACTTGCCCCTAACAAAGCGTACGCCAACACCTTAATAAAAGGGTTGGTAGAGGGAGAACAGCTTTCAGAAGCGGAAGCCATTGCTTACATAGAAGCTGCTGATAAATCGTTAAGACTTGCATAGGCATGTTATTGACATTGACTTTTGAGTGCAAATCTTCAAAAACAGCTTACTGGTACAGATAAAGTATTCCTTTTGTCGTAGATAACAAAACCCCCTAGGCTCTACATATTTTGCGTAGTTTAGTATATGCTGGGTGCTTTTTATGTGCTGCACTGCTGGTGCCTGCATTGCGTGTACATTTATTTTTAAATGGATTGTGTGCATATTTGTTTTGTAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	204045	213294	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11407	HDAC6	EC:3.5.1.98	Viral carcinogenesis	map05203
			Alcoholism	map05034

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005709.1	PF00850.14	Hist_deacetyl	287	593	3.10E-96

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.533
SRR1783600	control	15.618
SRR1783602	moderate drought stress	11.622
SRR1811619	moderate drought stress	11.771

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.670
DRR006520	Root Summer glycyrrhizin high producing strain	17.116
DRR006521	Root Winter glycyrrhizin high producing strain	10.328
DRR006522	Root Winter glycyrrhizin high producing strain	10.074
DRR006523	Root Summer glycyrrhizin low producing strain	16.372
DRR006524	Root Summer glycyrrhizin low producing strain	16.663
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.960
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.584

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.263
SRR2868004	Drought Stress (root)	34.756
SRR2967015	Control (root)	35.268

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.648
SRR9715740	Leaf	21.278
SRR9715741	Leaf	27.237
SRR9715739	Root	8.457
SRR9715742	Root	18.947
SRR9715743	Root	15.944

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.489
SRR8749028	MeJA induced 9h	19.104
SRR8749029	MeJA induced 9h	15.575
SRR8749030	Uninduced	10.810
SRR8749031	Uninduced	9.733
SRR8749032	Uninduced	7.499

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.243
SRR8400027	Control - Root	29.276