Gene detail

Gene detail information of Glyur000050s00005701

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G08020.1	RPA70-kDa subunit B
NR	XP_007155232.1	hypothetical protein PHAVU_003G184400g [Phaseolus vulgaris]
Swissprot	tr\|Q9SD82\|RFA1B_ARATH	Replication protein A 70 kDa DNA-binding subunit B
trEMBL	tr\|V7CEC1\|V7CEC1_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW27226.1}

Sequence

Transcript Sequence

>Glyur000050s00005701.1
AAAAGTAGCGCCACAAGTGAAAGTGAATTGAAAAACGGAGTGCGAAAAGCCGCGAACGACATCATTTCAAAGGCAATCTCCCGCCACAATCCCCACATTACAAAAACACACTCTCACTCGCTCATTTTTCCCTCCCTCCATCACTCTCTCATTTCATTTCCCTTCTCTACTCTCTACTCTACAAACCCTAACACAACACTCACTCTCATTTTGCCATGGCCAAATCGGTGAGCCCAGACGCCATCTCCACGTTGCTCGCAAACCCTTCCCCCGATTCCTCATCAGATCTTCCCGACATCGTCGTCCAAGTCCTCGATCTCAAGCAAAGCGGCAACAGATACATGTTCAATGCGAGTGATGGAAAGATGAAGCTGAGGGCAATTCTTCCTTCGAATCAGTACTCTGAGGTACTCTCGGGGAATATTCAGAACCTCGGTCTCATTCGCATCCTTGATTATACNCTCAACGATATCCCCAATAAGTCCGAAAAGTACCTTATCGTCACCAAGTGTGAACCGGTGTCTCCTGCGCTTGAAATGGAGATCAAGAGTGAGCAAACCAGTGGCATCCTTCTGAAGCCCAAGGAAGAAGATGGAGTCAAGAGCCAAGGTGCTGCTGGCATTGTTTTGAAGTCCAAACAGGACGTGGTGTCGAAATCTGCTGCTCAGATTGTACACGAGCAGCATGGAAACGTGGCTCCTTCTGCACGAATGGCCATGACTCGTAGGGTGCGTCCTCTTGTGTCTTTAAATCCTTATCAGGGTAATTGGACNATAAAGGTTAGTGTTACCAGCAAAGGAAACATGCGTACCTATAAGAATGCTAGAGGGGAAGGCTGTGTCTTCAATGTGGAATTGACGGATGAAGATGGTACTCAGATTCAAGCAACCATGTTTAATGCTGCTGCAAAGAAATTTTTTGACAAATTTGTCCTGGGAAAGGTCTACTATATTTCAAAGGGAACTTTAAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAACGATTATGAAATGACACTGAATGAAAATTCTGAGGTGGAAGAGGTAGCCAGTGAAGCGAGTTTTGTTCCAGAAACAAAATTCAAGTTTGTCCCGATTGATCAGCTGGGTCCTCATGTCAATAAGCCTGAACTTGTGGATGTTGTTGGAGTTGTCCAGAATGTGTCTTCAACAATGAGCATTCGGCGGAAGAGCGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGAAACGAAGAAGACAGTTGTTGTGTCTTTGTGGAATGAGCTTGCAACTAACACGGGGCAAGAGTTACTGGACATTGCTGATAAATCTCCAGTAATTGCAATCAAATCCCTCAGGGTTGGGGACTTTCAAGGTGTTTCTCTGTCAACTATAAGCAAAAGTGCAGTTCTGATAAATCCAGACATACCTGAAGCGAAGAAGCTCCGATGCTGGTACGATTCTGAAGGTAAGGATGCTGCAATGGCTTCTGTAGGCTCTGGTTCAAGTCCCACATCCAACAATGGAAATAGATCTGTGTACTCTGATCGTGTTTCACTTTCTCACATAACCACTAACCCATCCTTGGGGCAGGACAAGCCTGCATTTTTCAGTATTAGAGGTTATATAAGTTTCATAAGGCCGGAGCAGGCGATGTGGTATCATGCCTGTAAGACTTGCAATAAGAAAGTTACTGAAAGCATTGGTTCTGGGTACTGGTGCGAAGGTTGCCAGAAAAATGATGAACAATGCAATTTAAGATATATTATGGTTGTAAGAGTTTCTGATGCAAGTGGTGAGGCTTATGTCTCGGTCTTTAATGAGGAAGCTGAGAAGATCGTTGGGTGCTCTGCTGATGAGCTAGACAACCTTAAGTCACAGGATGGGGAAGANAATCCTTATCAACTGAAATTGAAGCAAGCTACTTGGGTTCCACACCTCTTCAGGGTTAGTGTTTCTCAGAATGAGTATAATAACGAGAAGCGGCAAAGGATAACAGCACGGGCAGTCGTTCCTGTTGATTTCGCTGCGGAGTCAAGGATCCTCCTCGAAGAGATATCAAAGATGAGAGCCTCTCAATAAAGATGGCTATGCTGATTTACTGTTTCTAGATCTTTTGGTTCACGGCTTGAGTAAATGTCACTGCTTGTAATTATCAATTCCTCAGATGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	175008	178405	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006260 DNA replication

GO:0006281 DNA repair

GO:0006310 DNA recombination

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005701.1	PF04057.7	Rep-A_N	5	102	3.70E-19
Glyur000050s00005701.1	PF01336.20	tRNA_anti-codon	185	271	9.20E-10
Glyur000050s00005701.1	PF08646.5	Rep_fac-A_C	462	606	7.80E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.962
SRR1783600	control	8.995
SRR1783602	moderate drought stress	4.224
SRR1811619	moderate drought stress	4.268

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.930
DRR006520	Root Summer glycyrrhizin high producing strain	7.771
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.783
DRR006524	Root Summer glycyrrhizin low producing strain	2.749
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.350
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.193

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.447
SRR2868004	Drought Stress (root)	9.900
SRR2967015	Control (root)	11.559

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.373
SRR9715740	Leaf	0.593
SRR9715741	Leaf	1.376
SRR9715739	Root	1.197
SRR9715742	Root	2.330
SRR9715743	Root	2.267

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.330
SRR8749028	MeJA induced 9h	11.833
SRR8749029	MeJA induced 9h	8.786
SRR8749030	Uninduced	1.185
SRR8749031	Uninduced	0.439
SRR8749032	Uninduced	0.831

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.116
SRR8400027	Control - Root	11.898