Gene detail

Gene detail information of Glyur000050s00005699.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74210.1	6.00E-173	PLC-like phosphodiesterases superfamily protein
NR	XP_004508666.1	0	PREDICTED: glycerophosphoryl diester phosphodiesterase-like [Cicer arietinum]
COG	YP_617251.1	1.00E-65	glycerophosphoryl diester phosphodiesterase [Sphingopyxis alaskensis RB2256]
Swissprot	tr\|Q9C907\|GDPD5_ARATH	0	Glycerophosphodiester phosphodiesterase GDPD5 {ECO:0000305} (Precursor)
trEMBL	tr\|G0T431\|G0T431_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G00360.1}

Sequence

Transcript Sequence

>Glyur000050s00005699.1
AAAATAACAGATAATGAGATTAGGGAACAGGGAATGCNTGCGGGGAATATTCGCGGAGCGTGCTATTTCCGCGGCAAGCAACGACTTTTGACTAATAATTTAACATTATTTAGAGGATATAGTCGTTCCTAGGAAGACTCAAAATAAGTGTATCAACAAGGCAGNTAGATCATTGGACTCTGCAAACGATGAAGTGAGGAACACAACACAGCACAACACGCCCATCATCTCCATCTCCATGGCTTCCTTGCCCAGTTTTGCACCTCTAGTATTTCTATTGCTCCTAATTGGGGGCTCGGCAAGGCCTTTGCATCCACTTCCTAGCAAAGGGGATAATGGAAGTAGGAAGCCTCTACAAACTTTTCGCCCGTATAACATTGCACATCGGGGTTCAAACGGAGAAATTCCTGAAGAAACTCGTCCTGCATACATGAAAGCTATTGAAGAAGGTGCAGACTTCATTGAAACTGATATCTTATCTTCCAAAGATGGTATTCTNATATGTTTCCATGATGTTACCCTTGATGATACTACTGACATCGCAAAACACAAAGAGTTTGCTAACCNTAAAAGAACATATGAAGTCCAAGGGGTTAACATCACTGGATTTTTTACTGTTGATTTCACATTAAATGAATTAAAGTCATTGAGGGTGAATCAGAGGTATAGCTTCAGGGATCAACAGTTTAATGGAAAATTTCAAATAATCACTTTTGAAGAGTTCATTTCCATAGCACTGGATGCACCCAGAGTTGTGGGAATATATCCAGAGATAAAAAATCCAGTATTTATCAATCAGCATGTGAAGTGGTCAGATGGCAAAAGATTTGAGGACAAGTTTGTAGAGACACTTCAGAAATATGGATACAAGGGATCATACCTGTCAAAAGATTGGTTGAAACAACCTGTATTCATTCAGTCATTTGCTCCAACTTCACTAGTGCATATATCAAATCAAACGGACTTGCCGAAGGTTTTATTAATTGATGATACTACTATTCCAACACAAGACACTAATCAGTCATATTGGGAAATTACATCTGATAAATACTTCNACTACATAAAGCAATATGTTGTCGGAATTGGGCCTTGGAAGGATACAGTGGTACCTGTGGCAAAAAATTATATGGTGACTCCTACTGATCTTGTTGCCAGGGCACATGCTCATAAGCTGCAGGTTCATCCATACACTTACAGAAATGAGAACCAGTTTTTGCATTTCAACTTCAGTCAAGATCCGTACAAGGAGTATGATTACTGGATCAACAAGATAGGAGTTGATGGTTTGTTCACAGACTTCACAGGTAGTCTTCATAATTTTCAGGAATGGACATCCTATAACAAGACTGCATCCAAGCTATTACATAAAATTGCTTTGTTGGTATCACCTTATAAATGATCTTGAGAAGTCAGATGATGTGTAAAAGAACATGTGTTTGGATTAAGTTATATTGTGTTCAGCATATTCAAGAGAGCTTTTGACTGGAAAGCTATTTTGTCTAAAAATTAAGCAAAACAAAGATTTTTGCTGCAATTCTAGTCTGGGTTTACATGAGTTAAAGAACATTGAAGCTAGGATTACTTAGTGGACATCATCTTCCCCNCCCCCACCCCTTTTTTCTAATTTGAAAAAAAAAAAACTAAACATGGGTTCTTTTGGGGTCATACTGAAATAACTAATCATACTGAAATTCCAGTTGGGAACAAATATGTTAAAGAAAAAAGTATAGGACAGAAATGTATCATAAGCGCTTGTATTAACTTCTGCCATTATTTCAATGTTTGTCTTGATAATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	169201	173828	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01126	E3.1.4.46, glpQ, ugpQ	EC:3.1.4.46	Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process

GO:0006071 glycerol metabolic process

GO:0006629 lipid metabolic process

molecular_function

GO:0008081 phosphoric diester hydrolase activity

GO:0008889 glycerophosphodiester phosphodiesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005699.1	PF03009.12	GDPD	49	356	1.20E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.359
SRR1783600	control	19.185
SRR1783602	moderate drought stress	11.785
SRR1811619	moderate drought stress	12.097

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.101
DRR006520	Root Summer glycyrrhizin high producing strain	29.508
DRR006521	Root Winter glycyrrhizin high producing strain	8.907
DRR006522	Root Winter glycyrrhizin high producing strain	8.459
DRR006523	Root Summer glycyrrhizin low producing strain	32.760
DRR006524	Root Summer glycyrrhizin low producing strain	33.168
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.699
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.419

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.844
SRR2868004	Drought Stress (root)	26.396
SRR2967015	Control (root)	25.260

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.082
SRR9715740	Leaf	39.403
SRR9715741	Leaf	51.277
SRR9715739	Root	4.456
SRR9715742	Root	15.705
SRR9715743	Root	13.137

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.149
SRR8749028	MeJA induced 9h	31.542
SRR8749029	MeJA induced 9h	29.730
SRR8749030	Uninduced	11.728
SRR8749031	Uninduced	4.871
SRR8749032	Uninduced	7.125

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.499
SRR8400027	Control - Root	38.570