Gene detail information of Glyur000050s00005698 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29575.4 | 3.00E-20 | ABI five binding protein 3 |
| NR | XP_006579503.1 | 1.15E-45 | PREDICTED: ninja-family protein Os03g0419100-like isoform X2 [Glycine max] |
| Swissprot | tr|Q94F39|AFP3_ARATH | 2.00E-23 | Ninja-family protein AFP3 |
| trEMBL | tr|K7KME3|K7KME3_SOYBN | 9.00E-47 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G00351.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00050 | 165890 | 167613 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000050s00005698.1 | PF07897.6 | DUF1675 | 110 | 212 | 3.90E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.103 |
| SRR1783600 | control | 0.092 |
| SRR1783602 | moderate drought stress | 0.093 |
| SRR1811619 | moderate drought stress | 0.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.579 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.262 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.349 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.188 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.107 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.933 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.756 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.213 |
| SRR2868004 | Drought Stress (root) | 3.815 |
| SRR2967015 | Control (root) | 2.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.867 |
| SRR9715740 | Leaf | 2.379 |
| SRR9715741 | Leaf | 17.918 |
| SRR9715739 | Root | 0.746 |
| SRR9715742 | Root | 6.490 |
| SRR9715743 | Root | 4.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.490 |
| SRR8749028 | MeJA induced 9h | 1.101 |
| SRR8749029 | MeJA induced 9h | 0.531 |
| SRR8749030 | Uninduced | 32.417 |
| SRR8749031 | Uninduced | 2.368 |
| SRR8749032 | Uninduced | 8.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.009 |
| SRR8400027 | Control - Root | 1.707 |