Gene detail

Gene detail information of Glyur000050s00005696

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60980.1	3.00E-97	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
NR	XP_006600586.1	0	PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X1 [Glycine max]
Swissprot	tr\|Q9XJ54\|NTF2_ORYSJ	1.00E-09	Nuclear transport factor 2
trEMBL	tr\|I1MT77\|I1MT77_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G08710.2}

Sequence

Transcript Sequence

>Glyur000050s00005696.1
TCTTTGCTCTCTCTCTCTCACTCACTTCCTTTCCCCTCCAAACACTCTGTTCTGTCGAGATCTCCCTTTCTCTCTGCTTTGCAAATCGTGTCTGCAACCAAGCAGATGGCAATGCAGGAAGCAAGCCCTGCNACTATTCCTAGGGCTCAAGTTGTTGGCAATGCATTTGTGGAGCAATATTATCACATTCTGCACCAATCCCCGAACTTGGTGCACAGATTTTATCAGGATTCAAGTTTCTTAAGCAGATCAGACAGCAATGGTGTGATGAAGACTGTGACAACTACAAAAGCAATCAATGAAACAATCACTTCCCTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCATATGAGAAAGGTGTGATAGTTTTAGTAACTGGGTGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGATAAAGGATATTATGTCTTAAATGACGTCTTTAGGTACATTGAGGAGAATGATGCACCACAGTTAAATTCTGCCTCAGTAGATATCACCAATGAAATTGCTGAGGCAGTGCACATGCGAGAATCAGAGGATATACGTGCTTCTGAACATCTTGTGGCAGACCCTGCAGCTTCTGCAGAGGGTGAAAACATTAATAATGATGCTGAAGTTTATCATCCTCAGGACAACGAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGATGTACCCTCTACTGATTTAAGTCAGAATGATATTGTTACAATTCATGATTCAACTTCTGCAGTCCAGGATGATGCACCAAGGACATCATATGCATCAATCGTAATGAAAAGTAACATAGCATCTGGTCATGTCTATGTTCCCAGCCGTGCTGCAAGAGTGGCATCTGCTAAATCCAGTGAACAATGGCCTGCTACTGCAAAATCTACTCCTGGGCCTGAGGCATTAGCTCCTAGTAGTGACAGTGCACCTGGGAGTAGTGATGTTCCTGAAGAAGCTGAAGGTCACTCCATATACATACGGAACCTCCCATTTAATGCAACAGTTGAACAACTTGATGAGGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGAATCCAAGTAAGAAGCAGTAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAAATGAGTTCCATGCACAGTGCACTTGAGGCTTCACCTATTACTGTTGGTGAGCGACAAGCTATTGTTGAGGAAAAGAGAACTACTACACGAGTCACCGGTGGTGGGAGAGGGAGGTATCCTTCAGGAAGAGGTGGTTTCCGAAGCGAGAGCTTCCGGGGGCGCGGGAAATTTGGTGGTGGACGGGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAGTTCTCAGGGCGACCTAAGAGTTCTCAACGGCCAAGTCAGAATGGAGGTGGGCGGGGTGGGCGTCAAGGTGTGGGGAACCATAATTCTACACCATCAACTTCAGTGTGAGCATGTGTATAAATGGAGAAAGAAGAAGAGAAAACAAAAGAAACTGGTGGGTTGATCATTTTTTTATATAAGCCAAACACCTCTTTCTTTTCCCTTTGTTTAGCCGCAAGTTCAGGTTTTCTGAACTTCAACACTGCCATCATTCAATAGAAGATCAGTGGTTTCATCAGCCCTTCCAGAAGTGTTTTGGATCGGTCATGTATTTTTGTTTTCCCCATTACGAATACACTTCTCTTCCTTTTTCCATTTTGTTAAAGTCATACATATTGATTGAGTTAGTGTGTTCCTCCTATTGAGTTGTCAACACGAATCTCCAATGTGGAAGTTTGATATGTAACTGAATTCCTTTTCTCTTTCTCATAAGATTAATGAAAACTATCTATGGTTTTCGCCGATGAGGTGAGTGTATAAGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	157365	161795	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0005622 intracellular

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005696.1	PF02136.15	NTF2	52	168	5.60E-32
Glyur000050s00005696.1	PF00076.17	RRM_1	340	397	1.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.362
SRR1783600	control	14.465
SRR1783602	moderate drought stress	13.539
SRR1811619	moderate drought stress	13.490

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.696
DRR006520	Root Summer glycyrrhizin high producing strain	16.064
DRR006521	Root Winter glycyrrhizin high producing strain	9.239
DRR006522	Root Winter glycyrrhizin high producing strain	8.933
DRR006523	Root Summer glycyrrhizin low producing strain	21.757
DRR006524	Root Summer glycyrrhizin low producing strain	21.263
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.085
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.166

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.062
SRR2868004	Drought Stress (root)	32.383
SRR2967015	Control (root)	33.332

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.115
SRR9715740	Leaf	9.550
SRR9715741	Leaf	16.132
SRR9715739	Root	7.252
SRR9715742	Root	16.768
SRR9715743	Root	15.164

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.444
SRR8749028	MeJA induced 9h	16.008
SRR8749029	MeJA induced 9h	6.354
SRR8749030	Uninduced	6.676
SRR8749031	Uninduced	3.106
SRR8749032	Uninduced	2.730

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.347
SRR8400027	Control - Root	32.878