Gene detail

Gene detail information of Glyur000050s00005693

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74160.1	5.00E-168
NR	XP_006578533.1	0	PREDICTED: protein LONGIFOLIA 2-like isoform X6 [Glycine max]
Swissprot	tr\|Q9S823\|LNG2_ARATH	2.00E-89	Protein LONGIFOLIA 2
trEMBL	tr\|K7KKG4\|K7KKG4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G32290.2}

Sequence

Transcript Sequence

>Glyur000050s00005693.1
ATGGCGGCAAAGCTCCTTCATTCTTTAGCAGATGATAACCCTGATTTACAGAAGCAGATAGGATGCATGACTGGNATTTTCCAACTCTTTGATCGTCACCATATTGTTACTGCTCGCCGCATTGCCCACAAGAGGCTTCCTCCTGGTAATTCCCACTTCAATTATGACAGCCTGGAAAGAGATTCCAATAGCATACACCAACGACAAACAGCACCTGATATGAGCTCAAACAAGAGTGTGNGTGACAAACATATAATTTCAACAGAATCATCAAGAGCTTCACTCTCTTCTTCTTGTTCATCATCAATGTCCTCTCTAGACTGTAAAGCTCAAGCTGATTCTCCCGCTGACCAGATTATTTTTCCTGAAACTCCTACGAGGGACTCAGTTATGAATCAAACAAGTACCTCTCACCATTTAGGAAGTCACTCCCTTGACCTGAGGGATGTGGTGAAGGACTCTATGTATAGAGCGGCTAGAGCACTATCCAGCGAAGAAGCTGCCATTCGCGCTATGAAGCATAGGGATTCACCAAGGCCTCTTCAGCTGTCCAAATCTTTTGATGGAAAACAAAGTGTACCTATTGATCAAAAAGAGTCTATTAGAGTCCTTACTAAACTTAAAGATGCACCTTGGCATTATGGTGAAGCTAAAGAACTTCCAAGATTATCACATAAAGTAAAAGATGGACATTTGCATTCCATCTCAAAGGATGCTCCTCNGTTTTCTTATGATGGAAGAGGAACAAGTCATTTATATTTCGAATCAACCGATACCATCAAATGCTCACCAAAGCTAAAAGAGCTTCCTAGGCTTTCACTGGACAGTAGGGAAAGTTCATGGCGTACATACAGCTCTGATTCAAAAGCCAGTCACCTCTCAAGAAATCTCAATATTGGTGGTGCTTCCCCCTCTGATGACAAAGTCTCTAGTCTACACCAGAGCCGGCCACCTAGCGTTGTAGCAAAATTAATGGGCTTGGAAACATTGCCAGAATCCTACTTGGCCAGTGANACTCAGTCAAGTTTGAGTGAAACAACTCAAGAAGATAATGGTCAGTTTGCCAAAAATGGAATCACCAGGCCACTCCGAGTTTCTAATTCCCCGAAAAGTTCATTGAAAGAACCAACTTCCCCGCGGTGGAAGAATCCTGATTTGATTGCAAAACCNATCTCAAGTTCAAGGTTTCCCATTGAACCAGCACCATGGAAGCAACAGGATGGAATCCAAGGTTCTCAGAAACCAAGTTGCAGGTCTACAAAAGCTCCAGCAAGAACACTGGATTCATTCCCTTCGGTTTATAGTGAGATTGAGAAGAGACTGGAGGATCTTGAATTTAAACGATCTGGAAGGGATCTCAGAGCTCTCAAACGGATACTAGAAGCAATGCAAGTGAAGGGACTATTAGAGACCAGAAAAGAAAAGCAGGCTTCAAATGTTGTTGGAAATCAGAGAGACTATGAACAAAAACTGAGTCTGACTCAGAATTCTATGTCAGTGAGGCAACAACAAACAGTCAGGGGGTCTGACTCAGCAAGGACCTTTGAATCTCCAATTGTGATCATGAAACCAGCAACACTTGTAGAAAAAACTGGATTTTCTGCTTCTTCAGTCATTCCAATTGGTGGACTTTCTGATTCCCATAAACCCCACAGTGGTAATGTACATGCACATAATAGAAAGGGGACAGCTTCTGGTGGAATAGCAAAAGATCAGTCTCCTAGAAAAAGTCACAGGGATGCTTCTACAAGTTCCAGTGATAAGAAAGCAAGTAGTAGCAAGACTGTAAAATCAGCACAATCTCAACCAAGGTCTCAACAATTTCCAAAGGAAAATAGCCCAAGTTCAGTAAAGAATTCAGGATCTGTGAGCCCAAGAATGAAACAGAAGAAGTTAGAGTTGGAGAGGCGATCACGCCCACCTACCCCGCCGTCAGATTTAAATAAGCCCAGAAGGCAATCTGGTAAGAAGACAACAGAATCAGATTCTCCTGGGAGAAAACTGAGACATAAAGTCCCTAATTCACAGCACAGTGATGACCAACTTAGTGAGATAAGCAATGAATCAAGAAGTTTAAGTTGCCAAGGGGATGAAATATCTATGCAANCAGATAGTATCACTGTCGACTCAAAGATGGATATGGAAGTCACANGCATCTTACAGTCTGCTGAAATTATTGATAGTCAAAGCCCATCTATGAAGGCTATTGAGCAGTTGGTTGCAGGATCAATGAAGAAGAAATCAACTCTGAGGTTGGATGAGGATGAGTCTATTGCTGCACTTGAAACAGATGCCCCAGATCATCCAAGCCCTGTTTCAGTTCTTGATGTCTCAGTATACAAAGATGATATGCCATCCCCTGTGAAGCTTATGTCCAGTGCTCCCAAAGCTGGTGATGCTCAAGAATCTAAAGAAGATGAGAATACAGATCAGAGGAACACTGCAGATAGCCTTTCAGTTAACAGCACGGGATCTGGAGGGATCAACCGCGAGAAATTGCAAAGCATAGATCACCTAGTTCAGAAGCTTAGGCGGCTAAACTCGAGTCACGACNAAGCTGAAATCGATTACATAGCTTCCCTTTGTGAGAACACAAATCCAGACCACAGATACATATCCGAAATACTATTAGCTTCAGGTCTACTACTCAGAGATCTGAGTTCCGAATTGCTGTGTACCTCACCAGGTCATCCCATTAANTCTGAGTTATTCCTTGTGTTGGAGCAGACAAAGGTAAGTAGCTTGCTTTCAAAAGAAGAAAGCATCCTCGGAAAAGCTGCTTACAAGAAGCTAAATTCAGACAAGTTTCACAGGAAACTCATCTTTGACACNGTGAATGAGATTCTTGGNGCAAAACTAGGCTCTTCTCCTGAGCCATGGTTGAGCTTGAAGCCTAATGGACTCACAAAGAAAATCCACAGTGCACAAAAGCTTCTTAAAGAACTGTGCCTTGAGATAGAAAAAATCCAACCCAAGAAGCCAGAATGCAGTTTAGAAGATGAAGGGGATGGACTGAAAAGTGTGCTAAGGGAAGATGTGATGCATCGCTCAGAAAGCTGGACAGATTTCCATGGTGAAGTACCTGGGGTAGTGTTGGATGTTGAGAGATTGATATTCAAGGACTTGGTTGATGAGATTGTGATNGGTGAAGCAACTAGTTTGCGAGTCAAGCCGGGTAGGCTCAGGAACAGGAAGCTATTTGGAAATTAGTTCATTCATTCCATTCTTCCCTTTCACATACATACTTTTTTTTTTATGTGCCAAGCCATAAAGTTTATAGATTTATTGCTTTGATTATTTTTTGCAAAGCTGCAAAGCAAGTAACTTACCATGGATTTACATCATGCGTATTCTCAAAGATTCATTGTGGAAAAATCTGTGTCCCATTTTTGTTTGTGTTTTGTCTGTTATGTTGAGTTTGGCTTCTGTAAGAGCACTAACTTTCATGTCATGATGAAAGTGTTAGAAATAGAAGTTACACAACCACAATGAAAGTGGACTAAACAACCGGGAAATGCCATGCAAGACCTGTCTCTGAAAAAGATTTCATATTTCTAGAC

Protein Sequence

>Glyur000050s00005693.1
MAAKLLHSLADDNPDLQKQIGCMTGIFQLFDRHHIVTARRIAHKRLPPGNSHFNYDSLERDSNSIHQRQTAPDMSSNKSVXDKHIISTESSRASLSSSCSSSMSSLDCKAQADSPADQIIFPETPTRDSVMNQTSTSHHLGSHSLDLRDVVKDSMYRAARALSSEEAAIRAMKHRDSPRPLQLSKSFDGKQSVPIDQKESIRVLTKLKDAPWHYGEAKELPRLSHKVKDGHLHSISKDAPXFSYDGRGTSHLYFESTDTIKCSPKLKELPRLSLDSRESSWRTYSSDSKASHLSRNLNIGGASPSDDKVSSLHQSRPPSVVAKLMGLETLPESYLASXTQSSLSETTQEDNGQFAKNGITRPLRVSNSPKSSLKEPTSPRWKNPDLIAKPISSSRFPIEPAPWKQQDGIQGSQKPSCRSTKAPARTLDSFPSVYSEIEKRLEDLEFKRSGRDLRALKRILEAMQVKGLLETRKEKQASNVVGNQRDYEQKLSLTQNSMSVRQQQTVRGSDSARTFESPIVIMKPATLVEKTGFSASSVIPIGGLSDSHKPHSGNVHAHNRKGTASGGIAKDQSPRKSHRDASTSSSDKKASSSKTVKSAQSQPRSQQFPKENSPSSVKNSGSVSPRMKQKKLELERRSRPPTPPSDLNKPRRQSGKKTTESDSPGRKLRHKVPNSQHSDDQLSEISNESRSLSCQGDEISMQXDSITVDSKMDMEVTXILQSAEIIDSQSPSMKAIEQLVAGSMKKKSTLRLDEDESIAALETDAPDHPSPVSVLDVSVYKDDMPSPVKLMSSAPKAGDAQESKEDENTDQRNTADSLSVNSTGSGGINREKLQSIDHLVQKLRRLNSSHDXAEIDYIASLCENTNPDHRYISEILLASGLLLRDLSSELLCTSPGHPIXSELFLVLEQTKVSSLLSKEESILGKAAYKKLNSDKFHRKLIFDTVNEILGAKLGSSPEPWLSLKPNGLTKKIHSAQKLLKELCLEIEKIQPKKPECSLEDEGDGLKSVLREDVMHRSESWTDFHGEVPGVVLDVERLIFKDLVDEIVXGEATSLRVKPGRLRNRKLFGN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	130248	135466	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005693.1	PF14383.1	VARLMGL	305	334	1.70E-05
Glyur000050s00005693.1	PF14309.1	DUF4378	868	1045	1.20E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.745
SRR1783600	control	3.796
SRR1783602	moderate drought stress	4.257
SRR1811619	moderate drought stress	4.243

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.046
DRR006520	Root Summer glycyrrhizin high producing strain	6.971
DRR006521	Root Winter glycyrrhizin high producing strain	0.250
DRR006522	Root Winter glycyrrhizin high producing strain	0.244
DRR006523	Root Summer glycyrrhizin low producing strain	2.853
DRR006524	Root Summer glycyrrhizin low producing strain	2.809
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.607
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.629

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.163
SRR2868004	Drought Stress (root)	6.804
SRR2967015	Control (root)	7.561

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.673
SRR9715740	Leaf	2.539
SRR9715741	Leaf	2.036
SRR9715739	Root	0.388
SRR9715742	Root	2.152
SRR9715743	Root	1.545

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.319
SRR8749028	MeJA induced 9h	0.198
SRR8749029	MeJA induced 9h	0.205
SRR8749030	Uninduced	0.018
SRR8749031	Uninduced	0.043
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.699
SRR8400027	Control - Root	6.864