Gene detail

Gene detail information of Glyur000050s00005689

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18600.1	2.00E-45	RHOMBOID-like protein 12
NR	XP_003525439.1	2.44E-63	PREDICTED: rhomboid protein 1, mitochondrial-like [Glycine max]
COG	YP_001820372.1	7.00E-08	rhomboid family protein [Opitutus terrae PB90-1]
trEMBL	tr\|I1JZG9\|I1JZG9_SOYBN	9.00E-64	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G00250.1}

Sequence

Transcript Sequence

>Glyur000050s00005689.1
TGCGACTCATCATGATAACTACTTGCCTAAGAATCCAGTAGAAAAAATGGCAGGCACCAAACTGTTAGCAGTGAGCAAGTTACATGAAACCGATGAATTGACCAACTAGTGAAACTCAAAAAAATAATGCCCCATATATCTTCACCCAANGATCTTCAAGTGACAATGCAATATTGGTGCCATTGTGGCATTGCAGCATTGGGAGAGGGAAAAAAAGGCTTATAAAAAACACAGCCTTGTGGCATCACTTGCTTTCCAGGACAACATGTAAAAAAACACANTACTGGGAGATAAAAAAGCTTACCCTTTGATAACTGAATCCAATAGAAGCCGCCTTGCCAATGGAGTTCTGTATCATAGAACAGAGATAATGGAGATTAGGGTAAAAAATAATGAGGGTAAAGAAAAACGGGTGAACAGGGATCAGTTTAAGCAACTATGGGCAAAGGGGCAAAGCCATGGACACCCTTCACCTTCTCGTGCCAATTGGAAGTGATGTAATATGGACCATTGAATCAATTGGAAGGTGGAGATCAAATTGAATGCAGCGACTGTAGGGGAGCTCTCTCTCTCTCTCTCTCTCTCTTCCAACATTTGTTCCCAATCCATAATCTGTTATTATTTCCCGCAAAATTTGCAACCCCAATACAGAAACAGTTAAACTCAATAAGAGATAGACGATGGCCACGCTGCGTCAGATCATATCCATTGAAACAGTAAAAAATGCAGTGCTTTGTTCGCAAGTTGCACCATCAACAAAACAACCTCTCCTACAATTACAATGCTCGCCGTATCTTCGACACTCTTGCTCGGAGTCACATCGTAAAACCCTCACAGCTAGAGCACCATATTTCCTCTTCCGTCATTCACCCGCTTCATCATTTTCACTCATGGCGCTCCCATCCCACCCTTTCCACCAAAATCCGCGCGTGTCTCCCACAACCAATGATCGTGCGGCAGCAGTTTCTCGCGCAACGCTCTCCCGAGGATCTTCTCCAAAAGCTTCCTANATTGTGGGCCCAGACTTCATTGTCATCGGCAGANCTTCAATTTCAACCCCATCCAGAATTATGATTCCTACTTGCGTCGTTGNTAATTTTCCATGTTGGGATGACAATGGGGCGGGACGGGGTAGTGCTTCCCCGTTTATACCCATGGTTGGTTTACAGTTCCTTGCTATTTTCAACCTTTTTATATGGAAATCATGGCTCAGTGGGCTAACACCTAATAACGCGATTTTAGGCTTGATTACAGCTAATGTTGCAATTTTCGTATTATGGAGGACAGCAGATGAAAAGTTCATGATAAATAACTTTACTATCTCTTTGGACAATATTAAGAGTGGACGCTTGCACACTTTGATTACCCATGCATTCAGTCACAGAGATGCGTGGCATATAATTAGCAACACTATTGGACTCTACTTCTTTGGAATGAATATTGCAAAATTTATTGGACCTAAATTTCTGCTGAAGCTGTATCTTGTTGGGGCACTTGGTGGTTCTGCTTTCTATTTAGCANATCAAGACTACAAGGCTCAAATATCTAAGAAGGTACTCATGGAGGAAGGGCAATCTTATTGGCAAATATTCAAGCAGAGTCTCGATGAAGACAAGAGAGGCGGGCGAGTTATCAACCCATCAAAGGAATTAGTGTTGGGGGCAAGTGGAGCTTTGATTGGTATTTTGATGGCTGACTATTATCTATTTGGAGAAGCATACGCACACTTCCCCCCAACTTTTAAAGCAGTTCCTTTAGCGCTGGGCATCTTTGCGATTGAGAAGTGGATGCTGAGTGTAATGAAGGGAGACACAGATGGTGAATCGTAGCCTTACATTTGGCGGGCGCTGCAGTTGTAGCCTTGGTATCGGTAGTCGTTCGAAAAGGAAGAATCAATCAAATTTCGTAACATGTTCTTGTCAAAAGAAATAAGAATTGGAAGTGAGTTCTAGGGTGGTGAAGTAGTGGGCCCATTACTTATCATCAATAACTATATAATTTTAGGTTATTGTCACGGCTCTGTCTAAGGTGAACCACCAAATAGGTGGTTCACCATGGGGAAGTTTAGTGAAAATAATTACATTAATTATAACCATTAGATTGATTAGACTCACTAGATCTTGCAGTGCACCCTCTACACCAAATCATATACCCCAGCATCTCTAACCCATCCCCTCTCCCCACCGTACACCCCCACGCTCCCATCCCATATTCCTCGCCGCCATTCCACTTGTCTCCTCCTCCACTGCCATCCATGCGCCGCTTCAGCGAGGAGCAGCAGTTCCATTCCCAGCGGCGGACTCTCAAGGAGGAAAGCTGCCATGGAGTCAGTGATGCAGAGAAGTCGATGAATGCCTCGGTCCCAGGCAAGGTCCAAGCCGTAGCAGATCGCCACCAGTTCAGCTTGCAAAATGGTCTTCTCCCCAAGGAAACCAGCGAAGCCAGCCACCCACCCAATCGCCATCCCTAGTCCGATTCAGACCCCCAACTCCGGTACGGCCGGTGTTCTCGAAATGACTCCCGTCAACATTAAGCACAGGGGTGGTCGCATCAGCTTGCTTCCATGAAATCCACCGCTCCACTATTCAGCTGGTTGTTGATGGTGAAGCTCCGATAGGTGCGGCCGTGGTGCTGAATAGCTCGTGGTGGTTTGCCTCTCCCTCGAAGGTGCGAAGAAGAAGAAGAAGACGATGACAACGACTACATCGAAGACGAAGACGTTGAAGAAGAAGAAGAAGACGAAGACGACGTCGTTCCTCAGCGAAACTTGCATTCCCCACTGAGTGATCGAGGCCGAACTCAAGGGAATCGAGGAAGCCACCACTGTGCAGGAGCTCCGCCTCGAGCCCGGACCGTCGGAGTTGCCTGACACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	104133	111781	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005689.1	PF01694.17	Rhomboid	220	372	7.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.379
SRR1783600	control	4.542
SRR1783602	moderate drought stress	6.645
SRR1811619	moderate drought stress	6.582

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.943
DRR006520	Root Summer glycyrrhizin high producing strain	4.462
DRR006521	Root Winter glycyrrhizin high producing strain	4.121
DRR006522	Root Winter glycyrrhizin high producing strain	4.254
DRR006523	Root Summer glycyrrhizin low producing strain	2.038
DRR006524	Root Summer glycyrrhizin low producing strain	1.978
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.462
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.624

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.420
SRR2868004	Drought Stress (root)	4.746
SRR2967015	Control (root)	5.591

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.211
SRR9715740	Leaf	1.487
SRR9715741	Leaf	2.179
SRR9715739	Root	0.537
SRR9715742	Root	1.284
SRR9715743	Root	1.229

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.236
SRR8749028	MeJA induced 9h	2.720
SRR8749029	MeJA induced 9h	0.971
SRR8749030	Uninduced	1.277
SRR8749031	Uninduced	0.626
SRR8749032	Uninduced	0.489

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.475
SRR8400027	Control - Root	5.409