Gene detail

Gene detail information of Glyur000050s00005686

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39040.1	0	transporter associated with antigen processing protein 2
NR	XP_004508658.1	0	PREDICTED: ABC transporter B family member 25-like isoform X1 [Cicer arietinum]
COG	YP_005367043.1	4.00E-170	efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q9FNU2\|AB25B_ORYSJ	0	ABC transporter B family member 25
trEMBL	tr\|A0A072URQ8\|A0A072URQ8_MEDTR	0	ABC transporter B family protein {ECO:0000313\|EMBL:KEH32041.1}

Sequence

Transcript Sequence

>Glyur000050s00005686.1
TTTATTTCATTTTTGTTTTTTGTTTTTTATGGACACGACTTCTTCTTCAGAGTCTTGGGTCTTGCTATATTATTGACTCGAAGGGTAGTAGTAGTAGTTGGAGGGATTCTGGGAGAGGCATTCGTTGTGGTTTCAGGGATGAACGGCTTACGAGGCGAAAGAGCCCCTCTCTTGGAGGCTGAGCGCGGTACTGGAAGGGGAAAGAGACACGATGATGCCTCGGCAGGCCAAGCCTCAGACCTTGAACACGGTGATGCGGTGCCGGCGGCAAATGTGGGATTCTTTCGAGTGTTTTCACTTGCAAAGCCTGAGGCTGGAAAGTTGGTGGTTGGTACGGTGGCTCTGTTGATTGCAGCCACATCGAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGGGATATCCGAACTCCCGAGGAGAAAGATGAAGCATTAAATGCTGTCAAGAGCACCATACTAGAAATCTTTCTGATTGTTGTTATCGGTTCAATTTGCACAGCACTTCGAGCCTGGCTTTTTTATTCTGCTAGTGAAAGGGTTGTTGCAAGGCTGAGGAAGGATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCCTTCTTTGATGTTACTAGAACTGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAACCTCTCTGAGGCCATGAGAAACCTCTCAACTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGCAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTATTTCTGTTGCTGTTCGTAAATTTGGTCGTTTCCTGCGTGAACTCTCTCATAAAACTCAAGCTGCAGCTGCCGTAGCTTCTTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACAGTTAGATCCTTTGCCCAGGAAGATTATGAAGTATCACGATACTCTGACAAAGTTGAAGAGACACTTAAGCTTGGACTTAAACAAGCTAAAGTTGTTGGCCTCTTTTCTGGAGGTCTTAATGCAGCATCTACACTCTCAGTTATTATAGTTGTTATATATGGAGCTAATTTGACGATCAAGGGTGCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTTGGATCTTCTATATCTGGTCTGTCGGGATTGTATACTGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTGTTTCAAATTTTGGATCGTGCCTCATCCATGCCTAAGTCAGGAAATAAATGTCCTCTGGGTGATCAAGATGGGGAAGTGGAACTAGATGATGTATGGTTTTCCTATCCATCACGTCCTACTCATTCGGTGCTGAAGGGCATTACATTGAAACTGTATCCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGCGGTGGNGGAAAGACTACTATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGGTGAATGGGGTTCCTCTGGTAGAAATATCACACAAACATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATTGAGGAGAACATAGCTTATGGGTTTGATGGCAAAGTTAATGCTGCTGATATAGAAAACGCAGCTAAAATGGCCAATGCGCATGAATTTATATCGAATTTCCCAGAAAAATACCAGACCTTTGTTGGCGAACGTGGGATAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCCAGAGCCCTGCTCATGGACCCAAAAATTCTCCTACTGGATGAAGCCACCAGTGCCCTTGATGCTGAAAGCGAATACCTAGTGCAAGATGCAATGGATTCTATCATGAAGGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAATACCGTTGCCGTTATTTCTGATGGCCAAGTAGTTGAGAGTGGCACGCACGATGAGCTTCTCGACAAGAATGGTGTCTATACTGCATTGGTCAGGAGACAACTACAAACAACAAAAGCCGAAATCTAATCTCTCTCTATCAAACTATGAATAACCGGTTAAGACACTCTATTCTGCCCGCCGCAGAGGGGGAGGCGACACATGATACTTTGAGACACAGGTTCCTTGGAAGGGCCTCACTTCAGTACCACAGTTGCAAGCTTCAACGTTAAGTTTAGCAAGAAATTGTAGATACTGGTCATTAGTTACCCCACAAGCCTAAAGTCAAAATCTTGCTCCTTCTGTTAAGTATTTTGATTTTTCATACTTGAACGGAGTAATGTGATGCTTGAAATTTGTTTTTTCCTCCCAATTTATGTGAAAATTTGCAGGTGGAACGATCCTCCTCTCCTCCCATATCAGATTTTCTGGCAAAAAACAAAATGCATTGATGGTACAAGCCTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	90860	96947	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005686.1	PF00664.18	ABC_membrane	110	383	1.50E-54
Glyur000050s00005686.1	PF00005.22	ABC_tran	451	601	3.40E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.948
SRR1783600	control	8.002
SRR1783602	moderate drought stress	10.224
SRR1811619	moderate drought stress	10.242

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.267
DRR006520	Root Summer glycyrrhizin high producing strain	20.238
DRR006521	Root Winter glycyrrhizin high producing strain	25.460
DRR006522	Root Winter glycyrrhizin high producing strain	24.937
DRR006523	Root Summer glycyrrhizin low producing strain	33.290
DRR006524	Root Summer glycyrrhizin low producing strain	33.696
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.913
DRR006526	Leaf Summer glycyrrhizin high producing strain	65.515

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	78.688
SRR2868004	Drought Stress (root)	83.154
SRR2967015	Control (root)	95.243

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	92.142
SRR9715740	Leaf	88.533
SRR9715741	Leaf	120.580
SRR9715739	Root	8.183
SRR9715742	Root	22.245
SRR9715743	Root	20.705

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.356
SRR8749028	MeJA induced 9h	33.189
SRR8749029	MeJA induced 9h	22.940
SRR8749030	Uninduced	36.991
SRR8749031	Uninduced	22.112
SRR8749032	Uninduced	23.980

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.118
SRR8400027	Control - Root	36.739