Gene detail

Gene detail information of Glyur000050s00005679.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60910.1	1.00E-78	AGAMOUS-like 8
NR	AFI08227.1	5.55E-109	MADS-box protein [Pisum sativum]
Swissprot	tr\|Q38876\|AGL8_ARATH	3.00E-101	Agamous-like MADS-box protein AGL8
trEMBL	tr\|I1U3J9\|I1U3J9_PEA	2.00E-109	MADS-box protein {ECO:0000313\|EMBL:AFI08227.1}

Sequence

Transcript Sequence

>Glyur000050s00005679.1
GTACGAGAAAAGTGNGGCCCAGACAGTAAGGGCAGTCTCAGCGGCCAATGGTGAGTTGAAACGTTTCCGNCGAAACCACTCAGGTTTTTCCAAAACCACCATTTAGATCTTATCAGCGGTTTCTCCCACTTTNGCCTTTTCCCGTCCTTTTCTTCACGAATATTAATGTGTTATCACACTGACCAGTGATATTTTCCCTTTTTTATAAAAAACGAAAGAGAAGAGAAGGATGGGAGGAGTTGCATAATGCTCAANGCATTGATTTCACAGTAGCCCGGATCCGTGTTCCTCTTTTCCTTCTCAATTTGCCTCCCCCCCACATCACACCTACAAATTAATCGACATTATTGAGAGCATACGAAAATAATTCAAAGAGAATAGAGATAAATTTAATTAAATATGTTGGTGATTGATCTGATGTGTTAATTATCATCAAAATTAGTGTGGGAATTGACTTAGTGAATTGTTTGTGGTGAACGAGAAAAATGGGGAGGGGAAGAGTGCAATTGAAGAGNATTGAGAACAAGATCAATAGGCAGGTGACATTCTCGAAGAGGAGGTCTGGTTTGCTGAAGAAAGCCCACGAGATCTCTGTGCTCTGCGATGCCGAAGTGGCTCTCATCGTCTTCTCCACTAAAGGCAAGCTTTTCGAGTACTCCAGCGATCCCTGTATGGAAAAAATTCTTGAACGGTATGAGAGATATTCATATGCGGAGAGGCAGCTTGTTGCAAATGACCAGGCATCAAATGAAAACTGGGTTTTAGAACACGCAAAGCTCAAAGCTAGGGTGGAAGTACTTCAGAGAAATCAAAGGAATTTTATGGGAGAAGAGCTGGATAGCTTAAGTCTCAAAGATCTTCAGAATTTGGAACATCAACTTGATTCCGCTCTCAAACACATTAGATCACGAAAGAACCAAGTCTTGTATGAATCTATTTCAGAGCTTCAGAAAAGGGATAAGGCACTCCAGGAACACAACAACTTGCTGGCCAAGAAGTACATGCAACATGATTTGAATGAAAACCAGATAAAGGAAAAAGAGAAAGCGGTTGCTCAAGAGGAGCAAGAGGGGCTGCAAAACAGTGTTGTGGACCCGACCCCTGTCCTTGATCCCCACAAGCAAGATGTAATGAAGAAACTGGAACGCAAACTAGAGCTAACGCCATTCTCCCCCCTTGGATGATTCGTCCNACAAATGAATAGAAGGCTATTATATTACATACACTGTACAACTTTTATTATTAAATACGAATACGACCGCTTGTAGGAAATCCATAAATATAGGGAAATGAGGGATGAACCCCTATCCCACACCCCTCTCATACCTATCACCTCATTGGAATGAGGTGTAGGAGGAGTGAATGGGTGTATGTGTATCATTACCCCATAAATATATGTACTATCATCACAAGGCCTATGATGAGTGATGACCAATAAAGAACCTGCATTGGAATCAGTTGCACTTGCATGTCTGACTGCATTACAATGCTGATGGGGGTNGGTTTATTAAATAGTCTGGCTGTATATATAGGCCTATATAATATAAAGAAAATGTTACATAGACCACCACTATACACCCATCACACACCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00050	33713	40070	-

Gene family

Gene family	subfamily
Transcription Factors Family	MIKC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000050s00005679.1	PF00319.13	SRF-TF	9	59	7.70E-28
Glyur000050s00005679.1	PF01486.12	K-box	75	173	1.70E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.080
SRR1783600	control	1.159
SRR1783602	moderate drought stress	1.341
SRR1811619	moderate drought stress	1.295

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.695
DRR006520	Root Summer glycyrrhizin high producing strain	11.596
DRR006521	Root Winter glycyrrhizin high producing strain	0.281
DRR006522	Root Winter glycyrrhizin high producing strain	0.316
DRR006523	Root Summer glycyrrhizin low producing strain	2.650
DRR006524	Root Summer glycyrrhizin low producing strain	2.642
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.322
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.409

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.711
SRR9715740	Leaf	1.357
SRR9715741	Leaf	3.333
SRR9715739	Root	0.000
SRR9715742	Root	0.334
SRR9715743	Root	0.362

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.320
SRR8400027	Control - Root	0.304