Gene detail

Gene detail information of Glyur000049s00003174

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02640.1	0	beta-xylosidase 2
NR	XP_004494414.1	0	PREDICTED: probable beta-D-xylosidase 2-like [Cicer arietinum]
COG	YP_004464029.1	7.00E-135	glycoside hydrolase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q94KD8\|BXL2_ARATH	0	Probable beta-D-xylosidase 2 (Precursor)
trEMBL	tr\|G7KSS4\|G7KSS4_MEDTR	0	Alpha-L-arabinofuranosidase/beta-D-xylosidase {ECO:0000313\|EMBL:AES82175.1}

Sequence

Transcript Sequence

>Glyur000049s00003174.1
CATTTATTTTATCATTTTCCAAATGGCTTCCACATTTTCACCACTCATTACCGTCTTTCTCCTCCTTTTGGCTTTGGGGGTTGTCANCCACACCGGCGAGTCACGTGACCCGTTCGCGTGTGATGGCACAACGAAGAACTTGCCGTTTTGCAAGGTGTCACTGGCGATACCGGAGAGGGTGAAGGACCTGATTGGAAGGTTGACGCTGGAAGAGAAGGTTAAGCTGTTAGTGAATAGTGCCGCGGCGGTTCCGAGGCTTGGAATCAAAGGGTATGAGTGGTGGTCTGAGGCACTCCATGGGGTTTCAAATGTGGGTCCCGGAACCAAGTTTAGTCCCATGTTCCCTGGCGCTACNAGCTTCCCTCAAGTCATCACCACCGCTGCTTCCTTCAACGCATCTTTGTGGGAGGCAATCGGACGGGTTGTCTCGGACGAAGCAAGGGCAATGTACAACGGAGGAACAGCAGGGTTAACGTATTGGAGCCCAAACGTGAACATTTTCAGAGACCCAAGGTGGGGCCGTGGACAGGAAACTCCCGGTGAGGATCCTATGCTAGCCGGTAGATATGCTGCTAGTTATGTGAGGGGGCTACAGGGAACGGACGGTGACCGGTTGAAGGTAGCTGCTTGTTGCAAACACTTCACAGCTTATGACCTGGATAATTGGAACGGTATGGACCGCTTTCACTTCAACGCACAGGTTAGTAAACAGGACAGAGAGGACACATTCGATGTGCCATTNAGGATGTGTGTGAAGGAAGGGAAAGTAGCGAGTGTGATGTGTTCTTACAATCAGGTCAATGGGGTCCCTACCTGTGCGGACCCCAACCTCCTAAAGAAAACAGTTCGTGGACAATGGCGTCTTGATGGGTACATTGTATCAGACTGTGACTCTGTTGGGGTGTTTTACAATAGCCAACATTATGCATCAACGCCAGAAGAAGCTGCTGCCGATGCCATTAAAGCAGGCTATGAAATTGGAGCCAAATATAACTTGTTAATTAGTTTGGGTTTGGATTTAGACTGTGGGCCATTCCTGGGATTGCACACGCAGGATGCGGTCAAAAAAGGATTGTTAAGCGAAGCAGATGTGAATGGCGCATTGATGAATACACTGACAGTGCAAATGAGGTTAGGGATGTTTGATGGAGAGGCATCGGCTCAGGCTTATGGCAAGTTGGGTCCAAGGGATGTGTGTAAACCGGCACACCAAGAGCTCGCCCTTGAAGCCGCCACACAAGGAATTGTGCTCCTCAAGAACAGTGGTCCCGTTTTGCCTCTCTCCNCACAGCGTCACCGCACCGTGGCTGTCATTGGGCCCAATTCTGATGTCACTCATACAATGATTGGAAACTATGAGGGAATAGGAAGATATGCCCGGACTATTCATCAGCTGGGTTGTGCAAATGTAGCTTGTAATGATGACAGGAATTTTGGGCCCGCACTAGATGCAGCCCGTCAAGCAGATGCAACAGTTCTAGTAATGGGCCTGGACCAGTCTATTGAAGCGGAAACAGTTGACAGGGCTAGCTTGCTTTTGCCCGGGCATCAACGGGATCTTGTCACAAAGGTAGCAGCTACCTCAAAGGGACCAACTATTCTGGTCNTGCTGTCTGGTGGTCCTCTTGACATTACTTTTGCAAAGAATCATCCTCGAGTTGTTGGCATCTTGTGGGCTGGTTATCCTGGCCAAGCTGGTGGTGCCGCCATTGCAGATATCCTATTTGGAACCGCTAACCCAGGAGGCAAGCTACCTGTGACATGGTACCCACAAGAGTATCTGAAAAACTTGGCCATGACAAATATGGCAATGCGACCAAGCCAATCAACAGGGTACCCGGGAAGAACGTATAGATTTTACAAGGGACCAGTGGTGTATCCATTTGGACAAGGATTAACCTACACCCACTTTGTTCACACAGTGGCAAGTGCGCCCACAGTGGTGTCAGTTCCATTGGCCGGTCACCGCCACGTCAATGGCACCAACAACATTTCAAACAAGGCAATTAGAGTGACACATGCGCGATGTGGCAAGCTCTCCATCACCCTCCACATCGACGTTGAAAACGTGGGGTCCAGAGACGGCACTCACACGCTGTTGGTGTTCTCTGCTCCCCCTGATGGTGGTGCCCATTGGGTGCCACAGAAGCAGTTGGTGGCATTTGAGAAAGTCCATGTTCCTGCCAAGTCAAAGCAGCGAGTCCCAGTTAATATCCATGTGTGCAAGTTCCTGAGTGTGGTGGATAGGTCTGGGATTAGGAGAATCCCAATGGGACAGCACAGTCTTCATATTGGTGATGTCAAACACTCTGTTTCACTCCAAGCAGCAGCACTCGGGATTATCAAGTCCTGAATTTTTAAGACCNGCGCGAGGAATATATATTATTTATATATGTTCCTTTCACTCAATAGTTCATAGCATATTTGTCCCATCTATTCAAAGTGCAATCTGTTGATATAAATGGATGGAAGTCTGAAAACATGTGAGACTGATTTATCTATTTACAGTCCAATAACATGATAGGATTCATTGCAATGTCGGGAGGGGAGATTAAGGAAATGTATTAATATCTCTCCCCCCATTTCTTTATGCTTCGTTTAGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	440319	447024	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003174.1	PF00933.16	Glyco_hydro_3	64	363	3.10E-56
Glyur000049s00003174.1	PF01915.17	Glyco_hydro_3_C	408	628	2.10E-49
Glyur000049s00003174.1	PF14310.1	Fn3-like	692	759	4.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.874
SRR1783600	control	0.856
SRR1783602	moderate drought stress	0.934
SRR1811619	moderate drought stress	0.952

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.342
DRR006520	Root Summer glycyrrhizin high producing strain	3.253
DRR006521	Root Winter glycyrrhizin high producing strain	0.031
DRR006522	Root Winter glycyrrhizin high producing strain	0.041
DRR006523	Root Summer glycyrrhizin low producing strain	4.890
DRR006524	Root Summer glycyrrhizin low producing strain	4.747
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.985
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.013

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.975
SRR2868004	Drought Stress (root)	12.127
SRR2967015	Control (root)	31.770

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.260
SRR9715740	Leaf	1.174
SRR9715741	Leaf	3.301
SRR9715739	Root	4.894
SRR9715742	Root	1.660
SRR9715743	Root	1.905

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.129
SRR8749028	MeJA induced 9h	0.473
SRR8749029	MeJA induced 9h	0.492
SRR8749030	Uninduced	0.305
SRR8749031	Uninduced	1.189
SRR8749032	Uninduced	0.976

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.578
SRR8400027	Control - Root	4.886