Gene detail information of Glyur000049s00003173 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02090.1 | 2.00E-22 | |
| NR | XP_003625958.1 | 2.19E-63 | hypothetical protein MTR_7g109410 [Medicago truncatula] |
| trEMBL | tr|G7KSS5|G7KSS5_MEDTR | 8.00E-64 | Multidrug resistance protein ABC transporter family protein {ECO:0000313|EMBL:AES82176.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 433366 | 433974 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003173.1 | PF14009.1 | DUF4228 | 1 | 95 | 7.00E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.248 |
| SRR1783600 | control | 1.146 |
| SRR1783602 | moderate drought stress | 0.843 |
| SRR1811619 | moderate drought stress | 1.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.311 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.597 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.186 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.836 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.414 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.405 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.767 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.636 |
| SRR2868004 | Drought Stress (root) | 7.413 |
| SRR2967015 | Control (root) | 7.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.151 |
| SRR9715740 | Leaf | 0.003 |
| SRR9715741 | Leaf | 0.154 |
| SRR9715739 | Root | 0.774 |
| SRR9715742 | Root | 0.645 |
| SRR9715743 | Root | 0.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.624 |
| SRR8749028 | MeJA induced 9h | 6.821 |
| SRR8749029 | MeJA induced 9h | 2.551 |
| SRR8749030 | Uninduced | 13.418 |
| SRR8749031 | Uninduced | 1.114 |
| SRR8749032 | Uninduced | 0.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.004 |
| SRR8400027 | Control - Root | 11.304 |