Gene detail information of Glyur000049s00003170 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62550.1 | 1.00E-24 | Adenine nucleotide alpha hydrolases-like superfamily protein |
| NR | XP_007145154.1 | 1.59E-43 | hypothetical protein PHAVU_007G214800g [Phaseolus vulgaris] |
| COG | YP_007039773.1 | 2.00E-08 | UspA domain protein [Saccharothrix espanaensis DSM 44229] |
| Swissprot | tr|Q8LGG8|USPAL_ARATH | 4.00E-10 | Universal stress protein A-like protein |
| trEMBL | tr|V7BJE6|V7BJE6_PHAVU | 6.00E-44 | Uncharacterized protein {ECO:0000313|EMBL:ESW17148.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 424421 | 424991 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003170.1 | PF00582.21 | Usp | 33 | 128 | 9.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.357 |
| SRR1783600 | control | 0.393 |
| SRR1783602 | moderate drought stress | 0.219 |
| SRR1811619 | moderate drought stress | 0.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.187 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.267 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.569 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.543 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.559 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.214 |
| SRR2868004 | Drought Stress (root) | 0.138 |
| SRR2967015 | Control (root) | 0.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.838 |
| SRR9715740 | Leaf | 11.409 |
| SRR9715741 | Leaf | 5.038 |
| SRR9715739 | Root | 0.625 |
| SRR9715742 | Root | 0.016 |
| SRR9715743 | Root | 0.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.298 |
| SRR8749028 | MeJA induced 9h | 0.707 |
| SRR8749029 | MeJA induced 9h | 0.026 |
| SRR8749030 | Uninduced | 0.129 |
| SRR8749031 | Uninduced | 0.629 |
| SRR8749032 | Uninduced | 1.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.355 |
| SRR8400027 | Control - Root | 0.417 |