Gene detail information of Glyur000049s00003169 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02610.1 | 3.00E-34 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_003625963.1 | 2.10E-119 | E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] |
| Swissprot | tr|F4JKK0|SUD1_ARATH | 1.00E-09 | Probable E3 ubiquitin ligase SUD1 |
| trEMBL | tr|G7KST0|G7KST0_MEDTR | 8.00E-120 | RING/FYVE/PHD zinc finger protein {ECO:0000313|EMBL:AES82181.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 416614 | 420231 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003169.1 | PF12906.2 | RINGv | 20 | 67 | 3.00E-14 |
| Glyur000049s00003169.1 | PF12428.3 | DUF3675 | 73 | 183 | 8.50E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.894 |
| SRR1783600 | control | 4.135 |
| SRR1783602 | moderate drought stress | 6.148 |
| SRR1811619 | moderate drought stress | 5.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.802 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.863 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.065 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.164 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.241 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.429 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.100 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.992 |
| SRR2868004 | Drought Stress (root) | 11.143 |
| SRR2967015 | Control (root) | 19.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.848 |
| SRR9715740 | Leaf | 6.227 |
| SRR9715741 | Leaf | 15.601 |
| SRR9715739 | Root | 2.135 |
| SRR9715742 | Root | 4.563 |
| SRR9715743 | Root | 5.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 46.263 |
| SRR8749028 | MeJA induced 9h | 147.913 |
| SRR8749029 | MeJA induced 9h | 80.438 |
| SRR8749030 | Uninduced | 97.886 |
| SRR8749031 | Uninduced | 167.410 |
| SRR8749032 | Uninduced | 158.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.998 |
| SRR8400027 | Control - Root | 8.913 |