Gene detail information of Glyur000049s00003164 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47400.1 | 2.00E-30 | CP12 domain-containing protein 1 |
| NR | CAA96570.1 | 4.80E-56 | CP12 [Pisum sativum] |
| COG | YP_005069080.1 | 5.00E-13 | hypothetical protein [Arthrospira platensis NIES-39] |
| Swissprot | tr|O22914|CP121_ARATH | 7.00E-38 | Calvin cycle protein CP12-1, chloroplastic (Precursor) |
| trEMBL | tr|O24292|O24292_PEA | 2.00E-56 | CP12 {ECO:0000313|EMBL:CAA96570.1} (Precursor) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 383817 | 384212 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003164.1 | PF02672.10 | CP12 | 62 | 131 | 2.40E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.410 |
| SRR1783600 | control | 0.416 |
| SRR1783602 | moderate drought stress | 1.656 |
| SRR1811619 | moderate drought stress | 1.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.674 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.110 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.963 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.727 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.575 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.045 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 727.771 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 551.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.533 |
| SRR2868004 | Drought Stress (root) | 108.149 |
| SRR2967015 | Control (root) | 80.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 679.308 |
| SRR9715740 | Leaf | 662.818 |
| SRR9715741 | Leaf | 696.079 |
| SRR9715739 | Root | 0.202 |
| SRR9715742 | Root | 8.819 |
| SRR9715743 | Root | 9.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.768 |
| SRR8749028 | MeJA induced 9h | 82.207 |
| SRR8749029 | MeJA induced 9h | 57.793 |
| SRR8749030 | Uninduced | 30.413 |
| SRR8749031 | Uninduced | 34.218 |
| SRR8749032 | Uninduced | 56.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.957 |
| SRR8400027 | Control - Root | 36.258 |