Gene detail information of Glyur000049s00003161 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62390.1 | 2.00E-153 | TRICHOME BIREFRINGENCE-LIKE 6 |
| NR | XP_003520751.1 | 0 | PREDICTED: protein YLS7-like [Glycine max] |
| Swissprot | tr|Q9LZQ1|TBL6_ARATH | 0 | Protein trichome birefringence-like 6 |
| trEMBL | tr|I1JQS4|I1JQS4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G37830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 368748 | 371438 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003161.1 | PF14416.1 | PMR5N | 166 | 219 | 8.50E-21 |
| Glyur000049s00003161.1 | PF13839.1 | PC-Esterase | 220 | 498 | 7.10E-79 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.916 |
| SRR1783600 | control | 3.871 |
| SRR1783602 | moderate drought stress | 3.019 |
| SRR1811619 | moderate drought stress | 3.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.981 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.741 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.060 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.910 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.817 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.936 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.536 |
| SRR2868004 | Drought Stress (root) | 14.983 |
| SRR2967015 | Control (root) | 18.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.574 |
| SRR9715740 | Leaf | 0.706 |
| SRR9715741 | Leaf | 1.154 |
| SRR9715739 | Root | 1.802 |
| SRR9715742 | Root | 2.290 |
| SRR9715743 | Root | 2.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.199 |
| SRR8749028 | MeJA induced 9h | 5.822 |
| SRR8749029 | MeJA induced 9h | 2.860 |
| SRR8749030 | Uninduced | 3.812 |
| SRR8749031 | Uninduced | 0.023 |
| SRR8749032 | Uninduced | 0.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.309 |
| SRR8400027 | Control - Root | 7.402 |