Gene detail

Gene detail information of Glyur000049s00003137

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01940.1	2.00E-43	NFU domain protein 1
NR	XP_003625999.1	5.08E-118	NifU-like protein [Medicago truncatula]
COG	YP_007141418.1	2.00E-24	nitrogen-fixing NifU domain-containing protein [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q93W77\|NIFU1_ARATH	1.00E-86	NifU-like protein 1, chloroplastic (Precursor)
trEMBL	tr\|G7KTN7\|G7KTN7_MEDTR	2.00E-118	Uncharacterized protein {ECO:0000313\|EMBL:AFK46895.1}

Sequence

Transcript Sequence

>Glyur000049s00003137.1
AAATTGGGCCCAAATTATAAAAGGCATCGACGAAAGNCCAAACTTTGACTCAGTTGGGCTGCATCGACACTGTAGGCTACAGATAGCAGTCTTGACCAAAAAAAAAAGGCTACAGTTAGCAGATGACATCTCCTNTCTAACAAATTCGTGGTGTGCATTACGCACCATAACCATACCTCTCGTGGAGCTTCCATGGCGACCCTAACCCCAGTTTGTTCGATAACGAGATTGAGTGTTCAACCAAAACAACACAATCACAATCACAATCACAATCAACATCAACTCAATTTCATAATTAGTGGGAAGCAGAAGAGAAGCTCAAGCACAATCCGGTTGGCCTTCTCTGCTCCCAACCAGAACCAGTCTTCTTCTTCTCCCGGGTTGTACACTTCTCAGAAATTCGACCTCACCGCCTCGAACGTGGACCTCGTTCTCGACGATGTTCGCCCTTACCTAATCTCCGACGGCGGCAACGTCGACGTCGTCTCCGTGGAAGACGGCGTCGTTTCTCTCAGGCTACAGGGAGCATGCGAAAGCTGTCCGAGCTCAACCACGACAATGAAGATGGGGATCGAGCGCGTTCTCAAGGAGAAATTCGGAGATGCCATCAACGATATCGTGCAAGTATACGATGATGATCGAGCAAGGGAGACTACTGTTGAGGCGGTGAATAATCATTTGGAGATATTGAGACCGGCGATTAAGAATTATGGAGGGAGCGTGGAAGTGATATCTGTGGAAGGAGGGGAGTGTGTGGTGGAGTATGTTGGGCCTGAGTCCATTGGGTCGGGAATCAAAGCCGCTATCAAGGAGAAGTTTCCAGACATTCTCAATGTTACCTTCTCCTCGACCTAGGAGTTACATAGGACCCACCTCATTATGTTCATTTTCACCCCCCTCTCATCTTCTACAACTACGATTAGTTACTCTCCTCCACACTGTGCGCAATCGAGGTTATACTATGTGTAGCGTAGGTGTGAGTATAACGGAGGGAAGTGAGCACTGTGCAGCTTCATCCATATATCAGTTTCTTCTCTGCTTCATCGAGGAGATTTGCCTATAACTGTTTTCGTGATTGGAAAATGACAATGGAAGATGGTGTTGGATTTATACTTTATTATTATTGTCCAGGTGATATGGTTTTATTAATAATTACAAACAAAATCTTGTTTTGTGTGAGGAGTATATATGAGTATATGACTACATGCAGTTAGTTAGTTTTTGTATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	214466	215793	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016226 iron-sulfur cluster assembly

molecular_function

GO:0005506 iron ion binding

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003137.1	PF01106.12	NifU	77	139	5.50E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.583
SRR1783600	control	57.320
SRR1783602	moderate drought stress	45.740
SRR1811619	moderate drought stress	46.551

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.404
DRR006520	Root Summer glycyrrhizin high producing strain	40.148
DRR006521	Root Winter glycyrrhizin high producing strain	28.567
DRR006522	Root Winter glycyrrhizin high producing strain	28.182
DRR006523	Root Summer glycyrrhizin low producing strain	52.023
DRR006524	Root Summer glycyrrhizin low producing strain	51.584
DRR006525	Leaf Summer glycyrrhizin high producing strain	75.622
DRR006526	Leaf Summer glycyrrhizin high producing strain	73.821

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.068
SRR2868004	Drought Stress (root)	39.045
SRR2967015	Control (root)	32.216

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.400
SRR9715740	Leaf	104.755
SRR9715741	Leaf	56.261
SRR9715739	Root	27.769
SRR9715742	Root	23.872
SRR9715743	Root	24.778

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.166
SRR8749028	MeJA induced 9h	20.883
SRR8749029	MeJA induced 9h	15.289
SRR8749030	Uninduced	13.735
SRR8749031	Uninduced	6.967
SRR8749032	Uninduced	13.748

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.350
SRR8400027	Control - Root	32.687