Gene detail information of Glyur000049s00003136 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26560.1 | 6.00E-67 | phospholipase A 2A |
| NR | XP_010094406.1 | 1.09E-117 | Patatin group A-3 [Morus notabilis] |
| COG | YP_001975077.1 | 5.00E-32 | patatin family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] |
| Swissprot | tr|O48723|PLP2_ARATH | 2.00E-78 | Patatin-like protein 2 |
| trEMBL | tr|W9R4B2|W9R4B2_9ROSA | 4.00E-118 | Patatin {ECO:0000256|RuleBase:RU361262} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 210752 | 213710 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003136.1 | PF01734.17 | Patatin | 9 | 234 | 1.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.813 |
| SRR1783600 | control | 4.376 |
| SRR1783602 | moderate drought stress | 11.654 |
| SRR1811619 | moderate drought stress | 13.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.386 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.466 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.732 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.547 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.003 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.093 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.127 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.400 |
| SRR2868004 | Drought Stress (root) | 2.980 |
| SRR2967015 | Control (root) | 3.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.274 |
| SRR9715740 | Leaf | 2.062 |
| SRR9715741 | Leaf | 2.908 |
| SRR9715739 | Root | 0.672 |
| SRR9715742 | Root | 1.783 |
| SRR9715743 | Root | 1.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.653 |
| SRR8749028 | MeJA induced 9h | 2.773 |
| SRR8749029 | MeJA induced 9h | 2.824 |
| SRR8749030 | Uninduced | 2.931 |
| SRR8749031 | Uninduced | 5.257 |
| SRR8749032 | Uninduced | 6.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.610 |
| SRR8400027 | Control - Root | 4.178 |