Gene detail

Gene detail information of Glyur000049s00003134.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49620.1	9.00E-49	myb domain protein 78
NR	BAH83498.1	1.64E-95	MYB12 transcription factor a [Glycine max]
Swissprot	tr\|Q9LDE1\|MY108_ARATH	2.00E-56	Transcription factor MYB108
trEMBL	tr\|C5NU12\|C5NU12_SOYBN	6.00E-96	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G38040.1}

Sequence

Transcript Sequence

>Glyur000049s00003134.1
ATGTACGGAGTTTGTTTAAATAAGAGGAATGATGATGATGCTGATGAGGCAAAGAAAGAACTATCCATAGAACAGGTACGAGTACGACAGAGTGAAGACGAGACGGGCATCAGAAAAGGTCCATGGAGCATTGAAGAGGACACCATTCTCGTAAATTACATTGCCACCCATGGTGGGCTCAAGAGGTCGGGGAAAAGCTGCAGGTTAAGATGGCTAAACTACTTGTGTCCTGGTGTTAGGCGTGGAAACATCACACTACAAGAACAGATAACCATTCTCGATCTCTATTCTCGGTGGGGCAATAGGTGGTCGGAAATTGCTCGACACTTGCCAGGAAGAACAGACAGCGAAGTAAGAAATTATTGGAGAACGAGAGTGGTGAAGAAAGCAAAGCAACTCAAGTGTGACGTCGACAGTAAACAGTTCAAAGACGCCTTGCGTGATGTGTGGATACCCCTTCTGATTGAGCGGGTTCAAACACCGTNTGAAACTCACTACCTGACCCGTACCGCCCACGACGAGCAACTGTTGGGCCCGGGCCCAAGCCCAAGCCCAAGTGCAAGTGCACATCGAGTCCAACACGAGTTACAAAGTCCAGGTTCGGGAACAGAGTGGGTAAACCGGAATTACTCCTCTAGCAGCAGCGGCGCTTCCCCGCCGGCTTCATCATCGTGCGTGGAGTTACAAGTGGANGTTCATTCTGAGCAACTGGATCATGATGTTTCGGGTCTGTACCCAAGTTTCGATAACCAAATGTTTGAACAGGGGAATACCACCTTACCCTTTGGTGTTGGTGCTGGTGGGGACTTTGACTTACTGCTGGATAGAACACATGGAATAAGTGAGGAAGAGGTGCTGATAACCAAAGGTCCATGGACAGAGGAGGAGGATTCTGTTCTCTTCAACTACATCACTGTCCACGGCGAAGGTCTAAAGCGAACGGGGAAAAGCTGCAGATTGAGATGGTTGAACTACTTGCGTCCAAGCGTTCGACGTGGGAACATAACCCTCCAAGAACAGCTCTTGATTCTTGAACTCCATTCCCGCTGGGGCAATCGGTGGTCGAAAATAGCTGAACAGATACCGGGGAGAACAGACAACGAGATAAAGAATTATTGGAGGACGAGGGTGGTGAAGCAGGCGAAGCTACTGAAATGCGATGTGAACAGCAAAGAGTTCAGAGACACGATGCGTTTTGTGTGGATGCCACGTATGGTGGAGCGGATCAAGGCTCATGAGGCTTCATCATCCTCCTCCAACACTGATCAACAACAACAGAACAGTGACCCGAGTTTGTTGTCAGTTCAGGCAGAGCACTCCTCAATCTCATCTTACTCACCTCTCGCGGCTCATCAATATGTCAAGGAGGCTCAATGTTCTCTCTCACCTGACTCTAGTACTGAATCTTACAATATTAATTTATTGGGTGGTGGTGGTGGTGGTAGCTGCTCTTCCTATAGTACTGCAGAGGAAGGTTCCAGAACCACCCCATGGCATTGGCAGCAGAGAAACTACTACTACTACTCCGACATACAACAAGGCAACGATTTCGGTACTGGTGCTGACTTATGGACCGATGAAAACATATGCTTCTTGCAACANCAGCTAGCTGATCATGACGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	194769	201741	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003134.1	PF00249.26	Myb_DNA-binding	81	124	1.50E-10
Glyur000049s00003134.1	PF00249.26	Myb_DNA-binding	289	326	2.00E-06
Glyur000049s00003134.1	PF00249.26	Myb_DNA-binding	332	375	5.20E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.032
SRR1783600	control	0.022
SRR1783602	moderate drought stress	0.070
SRR1811619	moderate drought stress	0.070

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.658
DRR006520	Root Summer glycyrrhizin high producing strain	0.686
DRR006521	Root Winter glycyrrhizin high producing strain	1.729
DRR006522	Root Winter glycyrrhizin high producing strain	1.407
DRR006523	Root Summer glycyrrhizin low producing strain	0.676
DRR006524	Root Summer glycyrrhizin low producing strain	0.590
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.400
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.402

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.380
SRR2868004	Drought Stress (root)	1.200
SRR2967015	Control (root)	1.168

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.082
SRR9715740	Leaf	0.020
SRR9715741	Leaf	0.077
SRR9715739	Root	0.727
SRR9715742	Root	0.819
SRR9715743	Root	1.123

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.076
SRR8749028	MeJA induced 9h	0.128
SRR8749029	MeJA induced 9h	0.424
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.083
SRR8749032	Uninduced	0.079

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.273
SRR8400027	Control - Root	0.137