Gene detail information of Glyur000049s00003131 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14670.1 | 8.00E-103 | ADP-ribosylation factor A1B |
| NR | KHN00225.1 | 1.33E-130 | ADP-ribosylation factor 2 [Glycine soja] |
| COG | YP_001737337.1 | 1.00E-34 | small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8] |
| Swissprot | tr|P51823|ARF2_ORYSJ | 6.00E-131 | ADP-ribosylation factor 2 |
| trEMBL | tr|W9R056|W9R056_9ROSA | 8.00E-131 | ADP-ribosylation factor 2 {ECO:0000313|EMBL:EXB52995.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 166868 | 168689 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003131.1 | PF00025.16 | Arf | 5 | 177 | 1.70E-79 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 64.436 |
| SRR1783600 | control | 64.353 |
| SRR1783602 | moderate drought stress | 49.454 |
| SRR1811619 | moderate drought stress | 49.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 74.547 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 74.233 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 89.356 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 84.107 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.622 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.185 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 65.162 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 63.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 165.615 |
| SRR2868004 | Drought Stress (root) | 114.406 |
| SRR2967015 | Control (root) | 103.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 143.388 |
| SRR9715740 | Leaf | 125.045 |
| SRR9715741 | Leaf | 131.235 |
| SRR9715739 | Root | 23.136 |
| SRR9715742 | Root | 44.011 |
| SRR9715743 | Root | 39.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 63.821 |
| SRR8749028 | MeJA induced 9h | 44.544 |
| SRR8749029 | MeJA induced 9h | 42.042 |
| SRR8749030 | Uninduced | 39.861 |
| SRR8749031 | Uninduced | 28.815 |
| SRR8749032 | Uninduced | 33.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 144.859 |
| SRR8400027 | Control - Root | 138.566 |