Gene detail information of Glyur000049s00003130 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01900.1 | 2.00E-38 | GLNB1 homolog |
| NR | XP_006576173.1 | 3.39E-76 | PREDICTED: uncharacterized protein LOC100499915 isoform X1 [Glycine max] |
| COG | YP_007113934.1 | 1.00E-18 | nitrogen regulatory protein P-II family [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9ZST4|GLNB_ARATH | 6.00E-47 | Nitrogen regulatory protein P-II homolog (Precursor) |
| trEMBL | tr|C6SY44|C6SY44_SOYBN | 4.00E-76 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU14167.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 161907 | 165500 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003130.1 | PF00543.17 | P-II | 100 | 153 | 3.10E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.213 |
| SRR1783600 | control | 12.119 |
| SRR1783602 | moderate drought stress | 11.606 |
| SRR1811619 | moderate drought stress | 11.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.703 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.299 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.650 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.128 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.750 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.653 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.980 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.005 |
| SRR2868004 | Drought Stress (root) | 27.786 |
| SRR2967015 | Control (root) | 28.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.545 |
| SRR9715740 | Leaf | 13.623 |
| SRR9715741 | Leaf | 12.673 |
| SRR9715739 | Root | 12.468 |
| SRR9715742 | Root | 14.150 |
| SRR9715743 | Root | 14.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.228 |
| SRR8749028 | MeJA induced 9h | 10.229 |
| SRR8749029 | MeJA induced 9h | 16.247 |
| SRR8749030 | Uninduced | 4.260 |
| SRR8749031 | Uninduced | 1.480 |
| SRR8749032 | Uninduced | 2.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.215 |
| SRR8400027 | Control - Root | 43.219 |