Gene detail information of Glyur000049s00003129 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01897.1 | 1.00E-43 | |
| NR | NP_001235605.1 | 2.75E-73 | uncharacterized protein LOC100305709 [Glycine max] |
| COG | NP_384656.1 | 8.00E-16 | hypothetical protein SMc02246 [Sinorhizobium meliloti 1021] |
| trEMBL | tr|C6SWB0|C6SWB0_SOYBN | 1.00E-73 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G38110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 160137 | 161694 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003129.1 | PF06108.7 | DUF952 | 8 | 105 | 7.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.151 |
| SRR1783600 | control | 3.277 |
| SRR1783602 | moderate drought stress | 5.400 |
| SRR1811619 | moderate drought stress | 5.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.750 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.426 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.100 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.709 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.029 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.957 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.161 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.951 |
| SRR2868004 | Drought Stress (root) | 17.211 |
| SRR2967015 | Control (root) | 13.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.388 |
| SRR9715740 | Leaf | 8.824 |
| SRR9715741 | Leaf | 8.876 |
| SRR9715739 | Root | 11.253 |
| SRR9715742 | Root | 8.085 |
| SRR9715743 | Root | 7.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.688 |
| SRR8749028 | MeJA induced 9h | 8.565 |
| SRR8749029 | MeJA induced 9h | 7.909 |
| SRR8749030 | Uninduced | 7.602 |
| SRR8749031 | Uninduced | 5.058 |
| SRR8749032 | Uninduced | 8.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.963 |
| SRR8400027 | Control - Root | 21.285 |