Gene detail

Gene detail information of Glyur000049s00003127

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G62270.1	HCO3- transporter family
NR	XP_007163214.1	hypothetical protein PHAVU_001G215700g [Phaseolus vulgaris]
Swissprot	tr\|Q9M1P7\|BOR2_ARATH	Probable boron transporter 2
trEMBL	tr\|V7D0P9\|V7D0P9_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW35208.1}

Sequence

Transcript Sequence

>Glyur000049s00003127.1
CTGACTTTTTGGCATTAAAAAAACTGGAAGGGCTACTGATGATGAAGCTGGAAAGATTGGACTGATTTGTATTTACATTTTACAGGCCATTGAACATGAACATAATATACAATATACTTTCCACATCAAATCTACCTTTTTTTTTTGCTTGCTTTTTAAGGCTTATAAATACTCTGCACACCACATTGTTGTTATTNGGAGGAAGCACTTGAGAAGGTTACATTACAACAAGTGCTGTTTCACAAATCCAGCTGGCTTCTTGGCAACATTTACATTACAGCGTTGAATCTCTAACTCACTCTCACATCCCATATGTCTTTGAAGCCAGGCTGCACTATTCATGCTCCCTCCTCCTTCTTTGATTTGTCCCCACCACATTCTTCATTCCTCCTTCCCCGGTTCACTTGTGATTTAGCCTTGTAGTTGTTTAGATATTAACCAAAACAGAAAAACCATGTAAATTACACTTTGTTGGGTTCTGATTGGCCAGTGTATTAATCCCAATTGCAGCCAAGTGTAGAAGGTCTTCTATACAGTGCTGATAATCTGATATTGATTATTATTCCCTTAACCTTCTTTGGTGGGGGCAGAACAGAAAGNTATGGAAGAAACATTTGTACCCTTTGAAGGGATCAAGAATGATCTCAGGGGAAGGTTAATGTGCTACAAGCAAGATTGGACAGGTGGAATCAGAGCAGGCTTAAGGATTTGGGCCCCTACCACATACATATTTTTTGCTTCTGCAATACCTGTCATTTCATTTGGTGAACAACTAGAGCGAGATACTGAGGGTGTTTTAACAGCCGTTCAAACCTTGGCATCCACTTCATTATGTGGCATTATACACTCAATCATCGGTGGTCAACCTTTACTGATTTTAGGAGTGGCAGAGCCTACGGTGATCATGTACACATTCATGTTCAATTTTGCAAAAGAGAGACCAGAATTGGGCAGGGAAATGTTTCTGGCATGGACTGGATGGGTATGTGTCTGGACTGCACTGTTGCTATTCTTACTGGCCGTCTTAGGGGCATGTTCCATCATCAACAGGTTTACCCGTATTGCAGGAGAGTTGTTTGGCCTGCTTATTGCAATGCTCTTCATGCAGCAAGCTATCAAAGGACTGGTGGATGAGTTTCGCATACCGAAAAGAGAAGATCCAAAATCAGTTGAGTTTTCACCTTCATGGAGGTTCTCTAATGGGATGTTTGCTTTGGTCCTTTCGTTTGGCCTTCTCCTCACTGCATTAAAAAGTAGAAAGGCTAGGTCATGGCGTTANGGTAGTGGTTGGCTCCGCAGCCTTATAGCAGACTATGGTGTGCCNCTTATGGTCCTAGTTTGGACAGGTGTGTCCTACATACCAACTGAAAGTGTTCCACATGGTATCCCAAGGCGCCTCTTCAGNCCAAATCCGTGGTCACCTGGTGCATATGAGAATTGGACTGTTATTAAGGCATGTGATATGGTCCAAGTTCCTGTTGTCTACATAATAGGAGCATTTATCCCNGCAACTATGATTGCAGTGCTTTATTACTTTGACCACAGTGTGGCATCCCAGCTTGCCCAGCAGAAAGAGTTCAATTTGAGAAAGCCATCTTCTTACCATTATGATTTGCTCCTTCTGGGGTTTCTGACCTTATTGTGTGGCCTTATTGGAATTCCTCCTGCAAATGGNGTCATACCACAATCTCCAATGCACACCAAGAGTCTGGCAACTCTTAAACATCAGTTGCTTCGTAACAGACTGGTGATAACCGCAAGAAAAAGTATTGGAAAGAATGCTAGTTTAGGGCAGTTATATGGAAGTATGCAAGAAGTATATCATCAAATGCAGACACCTCTTGTTTACCAGGACCATTCTGCTAGAGCACAGGGACTAAAAGAATTAAAAGAATCAACCATTCAAGCAGCTACAAGTATGGGAAACGTGGATGCCCCAGTAGATGAGACTATATTTGATGTTGAGAAAGAAATAGACGACCTTCTGCCTGTTGAGGTAAAGGAACAGCGTCTCAGTAACTTGCTTCAAGCAGTAATGGTGGGAGGATGNGTTGCAGCCATGCCTATCCTCAAGAAGATCCCAACCTCAGTCCTTTGGGGCTACTTTGCCTTCATGGCNATTGAAAGTTTACCAGGAAACCAGTTTTGGGAAAGGATCCTCTTACTCTTCACTGCACCAGNCAGAAGATACAAGGTGCTTGAGGATTACCATGCTACTTTTGTAGAAACAGTTCCNTTCAAGACAATAGCGACATTCACCATCTTCCAAACCGTTTATCTTCTTATTTGTTTTGGACTAACTTGGGTTCCTATTGCCGGGGTCATGTTTCCTATGATGATCATGCTCCTAGTTCCGGTAAGACAATACTTTCTCCCCAAATTTTTCAAAGGGGCACACCTTCAAGACTTGGATGCAGCAGCGTACGAGGAGCAAACTGCTTTACCATTCAACCTTGCAGCACAATCAGAGTTTGGAGCCGGTGCTTCCCAGGTTGGAGAAAGTGAGATCCTAGATGAAGTTATCACTAGAAGCCGTGGTGAGTTTAGGCACACTAGCAGTCCAAAGATCACAAGCTCCACCCCAACACCAGGAAATGATCCTAAAAGCCGTCTGAGCCCAAGTCTCTCTTTTAGTTCTCGTGTGGGGGAGCTCACCACTGAGCAAAGTCCTCGGTCCNGCGCAAGAGGTCCCCACAGTCCCCATAGTCCAAAGGCCAGAGAAGTGAGAGTAACAAGTCGGGGAAGAAGTCCTCTTAACCCAGATTCAAAACAGCAGGACAACAAATAATTCAATGCAAGAGACTGCAGTCATATGCCTTAGAAGGATATAGGAGGCTCATTTGTTGCTTCATTTCCAGTTTAGTTTGTTTTTCCTTTAATTTTGCTTGCATTGTTGTAACTTGTAAATTCCTTTCATTATCCCATATACAATAGGTATGTAACCAAAGTGTGGGGCTTCCTATGTCAATTGTATCAAGTGAATGTTACTATGTGCAAATGTATAATAACATCATCACGTTTGTTTCAATAAATNGTGACTAGTTTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	143859	148482	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006820 anion transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0005452 inorganic anion exchanger activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003127.1	PF00955.16	HCO3_cotransp	3	178	4.20E-28
Glyur000049s00003127.1	PF00955.16	HCO3_cotransp	201	372	1.00E-17
Glyur000049s00003127.1	PF00955.16	HCO3_cotransp	464	554	2.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	55.875
SRR1783600	control	55.881
SRR1783602	moderate drought stress	50.471
SRR1811619	moderate drought stress	49.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.840
DRR006520	Root Summer glycyrrhizin high producing strain	14.508
DRR006521	Root Winter glycyrrhizin high producing strain	1.201
DRR006522	Root Winter glycyrrhizin high producing strain	1.174
DRR006523	Root Summer glycyrrhizin low producing strain	14.343
DRR006524	Root Summer glycyrrhizin low producing strain	14.467
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.428
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.367

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	197.928
SRR2868004	Drought Stress (root)	185.019
SRR2967015	Control (root)	103.103

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.843
SRR9715740	Leaf	5.410
SRR9715741	Leaf	12.122
SRR9715739	Root	16.042
SRR9715742	Root	28.927
SRR9715743	Root	25.338

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.519
SRR8749028	MeJA induced 9h	0.881
SRR8749029	MeJA induced 9h	0.716
SRR8749030	Uninduced	1.593
SRR8749031	Uninduced	0.570
SRR8749032	Uninduced	0.375

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	158.643
SRR8400027	Control - Root	168.808