Gene detail information of Glyur000049s00003122.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G26751.1 | 0 | shaggy-related kinase 11 |
| NR | CAA48472.1 | 0 | protein kinase [Medicago sativa] |
| COG | YP_008149401.1 | 1.00E-24 | hypothetical protein SCE1572_14835 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|P51139|MSK3_MEDSA | 0 | Glycogen synthase kinase-3 homolog MsK-3 |
| trEMBL | tr|G7KTQ8|G7KTQ8_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK38277.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 122368 | 125996 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.5.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003122.1 | PF00069.20 | Pkinase | 76 | 357 | 1.90E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 75.798 |
| SRR1783600 | control | 76.306 |
| SRR1783602 | moderate drought stress | 69.784 |
| SRR1811619 | moderate drought stress | 69.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.315 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 51.931 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 53.125 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 51.278 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 109.035 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 108.436 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.319 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 118.834 |
| SRR2868004 | Drought Stress (root) | 125.584 |
| SRR2967015 | Control (root) | 120.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 87.659 |
| SRR9715740 | Leaf | 71.329 |
| SRR9715741 | Leaf | 108.492 |
| SRR9715739 | Root | 82.890 |
| SRR9715742 | Root | 115.562 |
| SRR9715743 | Root | 109.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 152.839 |
| SRR8749028 | MeJA induced 9h | 113.209 |
| SRR8749029 | MeJA induced 9h | 139.924 |
| SRR8749030 | Uninduced | 145.402 |
| SRR8749031 | Uninduced | 115.085 |
| SRR8749032 | Uninduced | 101.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 108.724 |
| SRR8400027 | Control - Root | 140.153 |