Gene detail

Gene detail information of Glyur000049s00003118

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47140.1	2.00E-85	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_006294086.1	2.26E-170	hypothetical protein CARUB_v10023080mg, partial [Capsella rubella]
COG	YP_007565317.1	2.00E-49	putative oxidoreductase [Ilumatobacter coccineus YM16-304]
Swissprot	tr\|Q94K41\|SDR3B_ARATH	1.00E-114	Short-chain dehydrogenase reductase 3b
trEMBL	tr\|F6HZD8\|F6HZD8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60053.1}

Sequence

Transcript Sequence

>Glyur000049s00003118.1
ATGTCCAAACAAAGGATATTTGTGGAAAATGGGGCACTCGTAGTCCTAGCAGATATTCAAGATGAATTGGGTCANCAAGTTGCAACTTCAATTGGTTTAGACAAAGTGAGTTACTGCCATTGTGACGTGAGAGATGAGAAGCAAGTTGAGGAAATGATAGCTTTTACCTTAAAGAAANATGGCAGCCTAGACATCTTGTTCTGCAATGCTGGGATTGCGGGTCCTTTCTCTAGCATACTAGAGTTTGATCTAAATGAATTTGACAACACAATGGCCNTTAATGTTCGGGGTGTCGCAGCAACAATCAAGCACGCTGCTCGTGTCATGGTGGCAAAAAAGATACGTGGATCCATAATTTGCAACGCTAGTGTAGCTACTTCGGTTATTGGATGTGTTAGTCATGATTATAACCCATCCAAACACGGTCTTGTGGGGCTTGTTCGCTCAACATGTAGTGAGCTTGGAGCTTATGGGATCAGAGTCAATTCNATCTCACCATATGCAATTGCCACACCTCTTGCACGTAGAGCATTNGGCANTGATCTAGGTGAAATTGAAGNTGTTGGCCTTGCCTCAGCCAATTTACAAGGAATTACATTGACGCTTAAACATATTGCCGAAGTTGCTTTGTTTCTTGCCTCTGATGAACCGGCTTATATAAGTGGACAAAACTTAGTGGTGGATGGACTATGGAGGCTTCTCGCCGTCAATTTTTTCTGGAGCTTTGCACTCTACAAACCTTATAAATATAGGTTGGAGGGTAAGGTGGCTCTCATCACAGGAGCAGCAAGTGGGATTGGAGAAGAGACAGTGAAACTGTTTGCTGAAAATGGAGCATTTGTTGTTGCAGCAGATATTCAAGATGAACTGGGACTTCAACTTGAAGCCTCAATAGGGTCAAATAAAGTAACATACCATCACTGTGATGTGAGAGATGAAAAACAGGTTGAAGAAACGGTCAATTTCACTTTGGAGAAACATGGTCACCTAGATATCCTGTTCAGTAATGCTGGAATAATAGGGTCTTTATCTGGTATACTTGATCTTGATCTGAGTTCACTTGAGAACACAATGGCCACAAATGTTCTTGGTGCAGCTGCAACAATTAAGCATGCTGCTCGTGCCATGGTTGCAAAAGGCACACGTGGATCCATCATATGCACCACAAGTGTTGCAGCTACAATTGGTGGAACTGGTCCTCATGGTTATACCACATCAAAACATGCCCTTCTGGGGCTGGTGAAATCAGCATGTGGTGAGCTTGGTGCACATGGGATCAGAGTTAATAGCATATCCCCTTTTGGTGTTGCCACGCCTCTTGCATGTAGAGCTTTCAATCTTCAACCCCATGAAGTGGAGGCTAATAGCTGTTCACAGGCTAATCTGAAAGGTGTTGTCTTGAAGGTTCGGCATGTGTCTGAGGCAGCTTTGTTTCTTGCTTCTGATGAAGCTGTTTACATCAGTGGTCATAACTTGGTGGTTGATGGTGGCTTCTCTGTGGTTACTCCTAGTTCATCTTCCACACCTGTTTACATGTAGACAGACACAGTACCAATAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	101874	105741	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003118.1	PF13561.1	adh_short_C2	7	229	6.80E-20
Glyur000049s00003118.1	PF00106.20	adh_short	255	417	6.70E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.161
SRR1783600	control	1.184
SRR1783602	moderate drought stress	1.808
SRR1811619	moderate drought stress	1.832

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.752
DRR006520	Root Summer glycyrrhizin high producing strain	1.769
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.545
DRR006524	Root Summer glycyrrhizin low producing strain	0.539
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.199
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.158

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.130
SRR2868004	Drought Stress (root)	4.320
SRR2967015	Control (root)	3.430

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.751
SRR9715740	Leaf	0.024
SRR9715741	Leaf	0.259
SRR9715739	Root	0.300
SRR9715742	Root	1.031
SRR9715743	Root	0.540

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.766
SRR8749028	MeJA induced 9h	0.582
SRR8749029	MeJA induced 9h	1.839
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.049
SRR8749032	Uninduced	0.350

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.624
SRR8400027	Control - Root	2.019