Gene detail information of Glyur000049s00003116 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62250.1 | 5.00E-07 | ubiquitin 5 |
| NR | AFX96040.1 | 5.50E-10 | ubiquitin extension protein [Grimmia pilifera] |
| Swissprot | tr|P0CG87|RS272_HORVU | 2.00E-11 | 40S ribosomal protein S27a (Precursor) |
| trEMBL | tr|K9MVQ9|K9MVQ9_9BRYO | 2.00E-10 | Ubiquitin extension protein {ECO:0000313|EMBL:AFX96040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 93729 | 94937 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003116.1 | PF01599.14 | Ribosomal_S27 | 8 | 34 | 5.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.732 |
| SRR1783600 | control | 19.606 |
| SRR1783602 | moderate drought stress | 41.504 |
| SRR1811619 | moderate drought stress | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.994 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.504 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.763 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.466 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.862 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.197 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.430 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.118 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |