Gene detail

Gene detail information of Glyur000049s00003111

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01850.2	0	S-adenosylmethionine synthetase 2
NR	XP_003554569.1	0	PREDICTED: S-adenosylmethionine synthase 1-like isoform 1 [Glycine max]
COG	YP_008801702.1	6.00E-153	S-adenosylmethionine synthetase [Exiguobacterium sp. MH3]
Swissprot	tr\|A9P822\|METK1_POPTR	0	S-adenosylmethionine synthase 1
trEMBL	tr\|I1NBG9\|I1NBG9_SOYBN	0	S-adenosylmethionine synthase {ECO:0000256\|RuleBase:RU000541}

Sequence

Transcript Sequence

>Glyur000049s00003111.1
ATGTCCTTGGTCCAGTACCCGTCATTTGAGTTTCTTAAAGTGGTCTCTGGTTTGGTTTGGTCTGGTCTGGTTCGAGCGAGTGTCGTCGTTTCAAGTTCTGAACCTTCTCCGTTTCACTCGCTCCAGGGTCACCCTGACAAGCTGTGCGACCAGATATCCGATGCAGTGCTCGATGCCTGTCTTGAACAGGATCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACTAACATGGTCATGGTCTTTGGAGAGATTACAACCAAGGCCAATGTAGACTATGAGAAGATTGTCCGTGACACATGCCGCAGCATTGGATTCATCTCCGATGACGTGGGTCTTGATGCTGACAAGTGCAAGGTCTTGGTCAACATTGAGCAGCAGAGCCCTGATATTGCTCAGGGTGTGCATGGCCACTTTACCAAGCGCCCAGAGGAGGTTGGTGCTGGTGACCAGGGTCACATGTTTGGTTATGCCACTGATGAAACCCCTGAATACATGCCATTGAGCCATGTCCTTGCAACCAAACTAGGAGCTCGCCTTACCGAGGTTAGGAAGAATGGTACCTGCGCTTGGCTGAGACCAGATGGCAAGACACAAGTAACCGTTGAGTACAACAATGACAACGGTGCTATGGTTCCAGTTCGTGTCCACACTGTNCTCATTTCTACCCAACATGATGAGACTGTCAGTAATGACCAAATTGCTGCCGATCTTAAGGAGCATGTTATCAAGCCTGTCATTCCTGAGAAGTACTTAGACGAGAAGACCATCTTCCACCTTAACCCTTCTGGCCGCTTTGTCATTGGCGGCCCCCATGGTGATGCCGGTCTCACTGGAAGAAAGATCATCATTGACACTTATGGTGGATGGGGTGCACANGGTGGGGGTGCCTTTTCAGGCAAGGACCCTACTAAGGTTGACAGAAGTGGTGCCTATATTGTAAGGCAGGCAGCAAAGAGTGTTGTAGCTAATGGCCTTGCCCGCAGGTGCATTGTTCAAGTTTCTTATGCAATTGGTGTTCCTGAACCCTTGTCAGTCTTTGTTGACACTTATGGAACTGGAAGGATTCCTGACAAGGAGATTCTCCAGATTGTGAAGGAGAATTTCGACTTCAGACCTGGAATGATCACCATTAACTTGGACCTTAAGAGGGGTGGCCACAGGTTTCTCAAGACAGCTGCCTATGGACACTTCGGAAGGGATGACCCAGACTTCACCTGGGAAGTTGTGAAGCCACTCAAGTGGGAGAAGCCTCAAGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	68348	70816	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00789	metK	EC:2.5.1.6	Biosynthesis of amino acids	map01230
			Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0006556 S-adenosylmethionine biosynthetic process

molecular_function

GO:0004478 methionine adenosyltransferase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003111.1	PF00438.15	S-AdoMet_synt_N	42	130	1.20E-35
Glyur000049s00003111.1	PF02772.11	S-AdoMet_synt_M	145	267	1.10E-49
Glyur000049s00003111.1	PF02773.11	S-AdoMet_synt_C	269	409	5.40E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	195.546
SRR1783600	control	194.987
SRR1783602	moderate drought stress	195.136
SRR1811619	moderate drought stress	193.664

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	281.512
DRR006520	Root Summer glycyrrhizin high producing strain	280.015
DRR006521	Root Winter glycyrrhizin high producing strain	256.759
DRR006522	Root Winter glycyrrhizin high producing strain	271.027
DRR006523	Root Summer glycyrrhizin low producing strain	203.995
DRR006524	Root Summer glycyrrhizin low producing strain	205.105
DRR006525	Leaf Summer glycyrrhizin high producing strain	112.134
DRR006526	Leaf Summer glycyrrhizin high producing strain	112.232

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	726.373
SRR2868004	Drought Stress (root)	676.544
SRR2967015	Control (root)	578.979

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	332.094
SRR9715740	Leaf	296.333
SRR9715741	Leaf	366.671
SRR9715739	Root	592.956
SRR9715742	Root	501.447
SRR9715743	Root	490.501

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	352.297
SRR8749028	MeJA induced 9h	473.449
SRR8749029	MeJA induced 9h	156.690
SRR8749030	Uninduced	579.108
SRR8749031	Uninduced	133.933
SRR8749032	Uninduced	181.222

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	518.747
SRR8400027	Control - Root	476.420